Mercurial > repos > bgruening > scipy_sparse

comparison sparse.xml @ 34:4efd73be98bb draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
author bgruening
date Tue, 13 Apr 2021 18:13:32 +0000
parents f9a2fe161db4
children
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33:ecd247e1ea9c 34:4efd73be98bb
1 <tool id="scipy_sparse" name="Sparse Matrix Functions" version="@VERSION@"> 1 <tool id="scipy_sparse" name="Sparse Matrix Functions" version="@VERSION@" profile="20.05">
2 <description>for manipulating 2-D Scipy sparse numeric data</description> 2 <description>for manipulating 2-D Scipy sparse numeric data</description>
3 <macros> 3 <macros>
4 <import>main_macros.xml</import> 4 <import>main_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="python_requirements"/> 6 <expand macro="python_requirements" />
7 <expand macro="macro_stdio"/> 7 <expand macro="macro_stdio" />
8 <version_command>echo "@VERSION@"</version_command> 8 <version_command>echo "@VERSION@"</version_command>
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 python "$sparse_script" '$inputs' 11 python "$sparse_script" '$inputs'
12 ]]> 12 ]]>
46 <param name="selected_function" type="select" label="Select a task:"> 46 <param name="selected_function" type="select" label="Select a task:">
47 <option value="vstack" selected="true">Stack sparse matrices vertically (vstack)</option> 47 <option value="vstack" selected="true">Stack sparse matrices vertically (vstack)</option>
48 <option value="hstack">Stack sparse matrices horizontally (hstack)</option> 48 <option value="hstack">Stack sparse matrices horizontally (hstack)</option>
49 </param> 49 </param>
50 <when value="vstack"> 50 <when value="vstack">
51 <expand macro="multiple_input" name="sparse_inputs"/> 51 <expand macro="multiple_input" name="sparse_inputs" />
52 </when> 52 </when>
53 <when value="hstack"> 53 <when value="hstack">
54 <expand macro="multiple_input" name="sparse_inputs"/> 54 <expand macro="multiple_input" name="sparse_inputs" />
55 </when> 55 </when>
56 </conditional> 56 </conditional>
57 </inputs> 57 </inputs>
58 <outputs> 58 <outputs>
59 <data format="txt" name="outfile"/> 59 <data format="txt" name="outfile" />
60 </outputs> 60 </outputs>
61 <tests> 61 <tests>
62 <test> 62 <test>
63 <param name="selected_function" value="vstack"/> 63 <param name="selected_function" value="vstack" />
64 <param name="sparse_inputs_0|input" value="csr_sparse1.mtx" ftype="txt"/> 64 <param name="sparse_inputs_0|input" value="csr_sparse1.mtx" ftype="txt" />
65 <param name="sparse_inputs_1|input" value="csr_sparse2.mtx" ftype="txt"/> 65 <param name="sparse_inputs_1|input" value="csr_sparse2.mtx" ftype="txt" />
66 <output name="outfile" file="csr_stack_result01.mtx"/> 66 <output name="outfile" file="csr_stack_result01.mtx" />
67 </test> 67 </test>
68 <test> 68 <test>
69 <param name="selected_function" value="hstack"/> 69 <param name="selected_function" value="hstack" />
70 <param name="sparse_inputs_0|input" value="csc_sparse1.mtx" ftype="txt"/> 70 <param name="sparse_inputs_0|input" value="csc_sparse1.mtx" ftype="txt" />
71 <param name="sparse_inputs_1|input" value="csc_sparse2.mtx" ftype="txt"/> 71 <param name="sparse_inputs_1|input" value="csc_sparse2.mtx" ftype="txt" />
72 <output name="outfile" file="csc_stack_result01.mtx"/> 72 <output name="outfile" file="csc_stack_result01.mtx" />
73 </test> 73 </test>
74 </tests> 74 </tests>
75 <help> 75 <help>
76 <![CDATA[ 76 <![CDATA[
77 **What it does** 77 **What it does**
88 **Parameters:** blocks sequence of sparse matrices with compatible shapes format. 88 **Parameters:** blocks sequence of sparse matrices with compatible shapes format.
89 89
90 For more information please refer to DOI:10.1109/MCSE.2011.37. 90 For more information please refer to DOI:10.1109/MCSE.2011.37.
91 ]]> 91 ]]>
92 </help> 92 </help>
93 <expand macro="scipy_citation"/> 93 <expand macro="scipy_citation" />
94 </tool> 94 </tool>