Mercurial > repos > bgruening > silicos_it

comparison tool_dependencies.xml @ 2:5f1d98674a21 draft default tip

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author bgruening
date Sun, 20 Apr 2014 09:03:37 -0400
parents fdc038522974
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1:fdc038522974 2:5f1d98674a21
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.7.1"> 3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="openbabel" version="2.3.2"> 6 <package name="openbabel" version="2.3.2">
7 <repository changeset_revision="99a10425de93" name="package_openbabel_2_3" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="99a10425de93" name="package_openbabel_2_3" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="rdkit" version="2012_12_1"> 9 <package name="rdkit" version="2012_12_1">
31 <action type="set_environment"> 31 <action type="set_environment">
32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/strip-it/bin</environment_variable> 32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/strip-it/bin</environment_variable>
33 </action> 33 </action>
34 34
35 <!-- compiling align-it --> 35 <!-- compiling align-it -->
36 <action type="shell_command">wget https://github.com/bgruening/silicos-it_store/raw/master/align-it/align-it-1.0.3.tar.gz</action> 36 <action type="download_file">https://github.com/bgruening/silicos-it_store/raw/master/align-it/align-it-1.0.3.tar.gz</action>
37 <action type="shell_command">tar xfvz align-it-1.0.3.tar.gz &amp;&amp; 37 <action type="shell_command">tar xfvz align-it-1.0.3.tar.gz &amp;&amp;
38 cd align-it-1.0.3 &amp;&amp; 38 cd align-it-1.0.3 &amp;&amp;
39 cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/align-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so &amp;&amp; 39 cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/align-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so &amp;&amp;
40 make &amp;&amp; 40 make &amp;&amp;
41 make install</action> 41 make install</action>
42 <action type="set_environment"> 42 <action type="set_environment">
43 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/align-it/bin</environment_variable> 43 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/align-it/bin</environment_variable>
44 </action> 44 </action>
45 45
46 <!-- compiling shape-it --> 46 <!-- compiling shape-it -->
47 <action type="shell_command">wget https://github.com/bgruening/silicos-it_store/raw/master/shape-it/shape-it-1.0.1.tar.gz</action> 47 <action type="download_file">https://github.com/bgruening/silicos-it_store/raw/master/shape-it/shape-it-1.0.1.tar.gz</action>
48 <action type="shell_command">tar xfvz shape-it-1.0.1.tar.gz &amp;&amp; 48 <action type="shell_command">tar xfvz shape-it-1.0.1.tar.gz &amp;&amp;
49 cd shape-it-1.0.1 &amp;&amp; 49 cd shape-it-1.0.1 &amp;&amp;
50 cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/shape-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so &amp;&amp; 50 cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/shape-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so &amp;&amp;
51 make &amp;&amp; 51 make &amp;&amp;
52 make install</action> 52 make install</action>