Mercurial > repos > bgruening > silicos_it

comparison tool_dependencies.xml @ 0:bb92d30b4f52 draft

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author bgruening
date Thu, 15 Aug 2013 03:34:00 -0400
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children fdc038522974
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-1:000000000000 0:bb92d30b4f52
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="openbabel" version="2.3.2">
7 <repository changeset_revision="99a10425de93" name="package_openbabel_2_3" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="rdkit" version="2012_12_1">
10 <repository changeset_revision="7c60f011c70c" name="package_rdkit_2012_12" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="silicos_it" version="1.0.1">
13 <install version="1.0">
14 <actions>
15 <action type="download_by_url">https://github.com/bgruening/silicos-it_store/raw/master/strip-it/strip-it-1.0.2.tar.gz</action>
16
17 <!-- populate the environment variables from the dependend repos
18 $OPENBABEL_INCLUDE_DIR and $OPENBABEL_LIB_DIR
19 -->
20 <action type="set_environment_for_install">
21 <repository changeset_revision="99a10425de93" name="package_openbabel_2_3" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
22 <package name="openbabel" version="2.3.2" />
23 </repository>
24 </action>
25
26 <!--compiling strip-it -->
27 <action type="shell_command">
28 cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/strip-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so &amp;&amp;
29 make &amp;&amp;
30 make install</action>
31 <action type="set_environment">
32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/strip-it/bin</environment_variable>
33 </action>
34
35 <!-- compiling align-it -->
36 <action type="shell_command">wget https://github.com/bgruening/silicos-it_store/raw/master/align-it/align-it-1.0.3.tar.gz</action>
37 <action type="shell_command">tar xfvz align-it-1.0.3.tar.gz &amp;&amp;
38 cd align-it-1.0.3 &amp;&amp;
39 cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/align-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so &amp;&amp;
40 make &amp;&amp;
41 make install</action>
42 <action type="set_environment">
43 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/align-it/bin</environment_variable>
44 </action>
45
46 <!-- compiling shape-it -->
47 <action type="shell_command">wget https://github.com/bgruening/silicos-it_store/raw/master/shape-it/shape-it-1.0.1.tar.gz</action>
48 <action type="shell_command">tar xfvz shape-it-1.0.1.tar.gz &amp;&amp;
49 cd shape-it-1.0.1 &amp;&amp;
50 cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/shape-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so &amp;&amp;
51 make &amp;&amp;
52 make install</action>
53 <action type="set_environment">
54 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/shape-it/bin</environment_variable>
55 </action>
56
57 </actions>
58 </install>
59 <readme>Compiling silicos-it requires g++ and CMake 2.4+.</readme>
60 </package>
61 </tool_dependency>