Mercurial > repos > bgruening > sklearn_data_preprocess
diff pre_process.xml @ 21:f156acc7239b draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
| author | bgruening |
|---|---|
| date | Sat, 29 Sep 2018 07:31:15 -0400 |
| parents | f196d4715cfb |
| children | d6b8103c909c |
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--- a/pre_process.xml Thu Aug 23 16:16:54 2018 -0400 +++ b/pre_process.xml Sat Sep 29 07:31:15 2018 -0400 @@ -23,7 +23,7 @@ from scipy.io import mmwrite from sklearn import preprocessing -execfile("$__tool_directory__/utils.py") +exec(open("$__tool_directory__/utils.py").read(), globals()) input_json_path = sys.argv[1] with open(input_json_path, "r") as param_handler: @@ -60,7 +60,7 @@ result = estimator.transform(X) #if $input_type.selected_input_type == "sparse": -with open("$outfile_transform", "w+") as transform_handler: +with open("$outfile_transform", "wb") as transform_handler: mmwrite(transform_handler, result) #else: res = pandas.DataFrame(result)