Mercurial > repos > bgruening > sklearn_discriminant_classifier

comparison discriminant.xml @ 23:75bcb7c19fcf draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
author bgruening
date Sun, 30 Dec 2018 02:00:37 -0500
parents 56ddc98c484e
children 5552eda109bd
comparison
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22:686d0c3e3b62 23:75bcb7c19fcf
85 <expand macro="sl_mixed_input"/> 85 <expand macro="sl_mixed_input"/>
86 <section name="options" title="Advanced Options" expanded="False"> 86 <section name="options" title="Advanced Options" expanded="False">
87 <!--expand macro="priors"/--> 87 <!--expand macro="priors"/-->
88 <param argument="reg_param" type="float" optional="true" value="0.0" label="Regularization coefficient" help="Covariance estimate regularizer."/> 88 <param argument="reg_param" type="float" optional="true" value="0.0" label="Regularization coefficient" help="Covariance estimate regularizer."/>
89 <expand macro="tol" default_value="0.00001" help_text="Rank estimation threshold used in SVD solver."/> 89 <expand macro="tol" default_value="0.00001" help_text="Rank estimation threshold used in SVD solver."/>
90 <param argument="store_covariances" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false" 90 <param argument="store_covariance" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false"
91 label="Store covariances" help="Compute class covariance matrixes."/> 91 label="Store covariances" help="Compute class covariance matrixes."/>
92 </section> 92 </section>
93 </when> 93 </when>
94 </expand> 94 </expand>
95 </inputs> 95 </inputs>
104 <param name="col2" value="5"/> 104 <param name="col2" value="5"/>
105 <param name="selected_task" value="train"/> 105 <param name="selected_task" value="train"/>
106 <param name="selected_algorithm" value="LinearDiscriminantAnalysis"/> 106 <param name="selected_algorithm" value="LinearDiscriminantAnalysis"/>
107 <param name="solver" value="svd" /> 107 <param name="solver" value="svd" />
108 <param name="store_covariance" value="True"/> 108 <param name="store_covariance" value="True"/>
109 <output name="outfile_fit" file="lda_model01" compare="sim_size" delta="500"/> 109 <output name="outfile_fit" file="lda_model01" compare="sim_size" delta="1"/>
110 </test> 110 </test>
111 <test> 111 <test>
112 <param name="infile1" value="train.tabular" ftype="tabular"/> 112 <param name="infile1" value="train.tabular" ftype="tabular"/>
113 <param name="infile2" value="train.tabular" ftype="tabular"/> 113 <param name="infile2" value="train.tabular" ftype="tabular"/>
114 <param name="header1" value="True"/> 114 <param name="header1" value="True"/>
116 <param name="col1" value="1,2,3,4"/> 116 <param name="col1" value="1,2,3,4"/>
117 <param name="col2" value="5"/> 117 <param name="col2" value="5"/>
118 <param name="selected_task" value="train"/> 118 <param name="selected_task" value="train"/>
119 <param name="selected_algorithm" value="LinearDiscriminantAnalysis"/> 119 <param name="selected_algorithm" value="LinearDiscriminantAnalysis"/>
120 <param name="solver" value="lsqr"/> 120 <param name="solver" value="lsqr"/>
121 <output name="outfile_fit" file="lda_model02" compare="sim_size" delta="500"/> 121 <output name="outfile_fit" file="lda_model02" compare="sim_size" delta="1"/>
122 </test> 122 </test>
123 <test> 123 <test>
124 <param name="infile1" value="train.tabular" ftype="tabular"/> 124 <param name="infile1" value="train.tabular" ftype="tabular"/>
125 <param name="infile2" value="train.tabular" ftype="tabular"/> 125 <param name="infile2" value="train.tabular" ftype="tabular"/>
126 <param name="header1" value="True"/> 126 <param name="header1" value="True"/>
127 <param name="header2" value="True"/> 127 <param name="header2" value="True"/>
128 <param name="col1" value="1,2,3,4"/> 128 <param name="col1" value="1,2,3,4"/>
129 <param name="col2" value="5"/> 129 <param name="col2" value="5"/>
130 <param name="selected_task" value="train"/> 130 <param name="selected_task" value="train"/>
131 <param name="selected_algorithm" value="QuadraticDiscriminantAnalysis"/> 131 <param name="selected_algorithm" value="QuadraticDiscriminantAnalysis"/>
132 <output name="outfile_fit" file="qda_model01" compare="sim_size" delta="500"/> 132 <output name="outfile_fit" file="qda_model01" compare="sim_size" delta="1"/>
133 </test> 133 </test>
134 <test> 134 <test>
135 <param name="infile_model" value="lda_model01" ftype="zip"/> 135 <param name="infile_model" value="lda_model01" ftype="zip"/>
136 <param name="infile_data" value="test.tabular" ftype="tabular"/> 136 <param name="infile_data" value="test.tabular" ftype="tabular"/>
137 <param name="header" value="True"/> 137 <param name="header" value="True"/>