Mercurial > repos > bgruening > sklearn_discriminant_classifier

comparison main_macros.xml @ 12:cb14b6827f70 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
author bgruening
date Sun, 01 Jul 2018 03:20:59 -0400
parents 1d2bcebc8678
children f46da2feb233
comparison
equal deleted inserted replaced
11:1d2bcebc8678 12:cb14b6827f70
8 cols = list(map(lambda x: x - 1, c)) 8 cols = list(map(lambda x: x - 1, c))
9 data = data.iloc[:,cols] 9 data = data.iloc[:,cols]
10 if c_option == 'all_but_by_index_number': 10 if c_option == 'all_but_by_index_number':
11 cols = list(map(lambda x: x - 1, c)) 11 cols = list(map(lambda x: x - 1, c))
12 data.drop(data.columns[cols], axis=1, inplace=True) 12 data.drop(data.columns[cols], axis=1, inplace=True)
13 if c_option == 'by_header_name':
14 cols = [e.strip() for e in c.split(',')]
15 data = data[cols]
16 if c_option == 'all_but_by_header_name':
17 cols = [e.strip() for e in c.split(',')]
18 data.drop(cols, axis=1, inplace=True)
13 y = data.values 19 y = data.values
14 if return_df: 20 if return_df:
15 return y, data 21 return y, data
16 else: 22 else:
17 return y 23 return y
444 </xml> 450 </xml>
445 451
446 <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1"> 452 <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1">
447 <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:"> 453 <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:">
448 <option value="by_index_number" selected="true">Select columns by column index number(s)</option> 454 <option value="by_index_number" selected="true">Select columns by column index number(s)</option>
449 <!--<option value="by_header_name">Select columns by column header name(s)</option>--> 455 <option value="by_header_name">Select columns by column header name(s)</option>
450 <option value="all_but_by_index_number">All columns but by column index number(s)</option> 456 <option value="all_but_by_index_number">All columns but by column index number(s)</option>
451 <!--<option value="all_but_by_header_name">All columns but by column header name(s)</option> --> 457 <option value="all_but_by_header_name">All columns but by column header name(s)</option>
452 <option value="all_columns">All columns</option> 458 <option value="all_columns">All columns</option>
453 </param> 459 </param>
454 <when value="by_index_number"> 460 <when value="by_index_number">
455 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/> 461 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/>
456 </when> 462 </when>
463 <when value="by_header_name">
464 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="String seperate by colon. For example: target1,target2"/>
465 </when>
457 <when value="all_but_by_index_number"> 466 <when value="all_but_by_index_number">
458 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/> 467 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/>
468 </when>
469 <when value="all_but_by_header_name">
470 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="String seperate by colon. For example: target1,target2"/>
459 </when> 471 </when>
460 <when value="all_columns"> 472 <when value="all_columns">
461 </when> 473 </when>
462 </xml> 474 </xml>
463 475