Mercurial > repos > bgruening > sklearn_estimator_attributes

comparison estimator_attributes.xml @ 11:27fabe5feedc draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
author bgruening
date Tue, 13 Apr 2021 17:44:35 +0000
parents c411ff569a26
children a01fa4e8fe4f
comparison
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10:07843f917990 11:27fabe5feedc
1 <tool id="sklearn_estimator_attributes" name="Estimator attributes" version="@VERSION@"> 1 <tool id="sklearn_estimator_attributes" name="Estimator attributes" version="@VERSION@" profile="20.05">
2 <description>get important attributes from an estimator or scikit object</description> 2 <description>get important attributes from an estimator or scikit object</description>
3 <macros> 3 <macros>
4 <import>main_macros.xml</import> 4 <import>main_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="python_requirements"/> 6 <expand macro="python_requirements" />
7 <expand macro="macro_stdio"/> 7 <expand macro="macro_stdio" />
8 <version_command>echo "@VERSION@"</version_command> 8 <version_command>echo "@VERSION@"</version_command>
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 python '$main_script' 11 python '$main_script'
12 ]]> 12 ]]>
85 85
86 ]]> 86 ]]>
87 </configfile> 87 </configfile>
88 </configfiles> 88 </configfiles>
89 <inputs> 89 <inputs>
90 <param name="infile_object" type="data" format="zip" label="Choose the dataset containing estimator/pipeline object"/> 90 <param name="infile_object" type="data" format="zip" label="Choose the dataset containing estimator/pipeline object" />
91 <param name="attribute_type" type="select" label="Select an attribute retrival type"> 91 <param name="attribute_type" type="select" label="Select an attribute retrival type">
92 <option value="get_params" selected="true">Estimator - get_params()</option> 92 <option value="get_params" selected="true">Estimator - get_params()</option>
93 <option value="feature_importances_" >Fitted estimator - feature_importances_ </option> 93 <option value="feature_importances_">Fitted estimator - feature_importances_ </option>
94 <option value="coef_">Fitted estimator - coef_ </option> 94 <option value="coef_">Fitted estimator - coef_ </option>
95 <option value="train_score_">Fitted estimator - train_score_ </option> 95 <option value="train_score_">Fitted estimator - train_score_ </option>
96 <option value="oob_score_">Fitted estimator - oob_score_ </option> 96 <option value="oob_score_">Fitted estimator - oob_score_ </option>
97 <option value="init_">Fitted estimator - init_ </option> 97 <option value="init_">Fitted estimator - init_ </option>
98 <option value="classifier_">Fitted BinarizeTargetClassifier - classifier_</option> 98 <option value="classifier_">Fitted BinarizeTargetClassifier - classifier_</option>
120 <when input="attribute_type" value="final_estimator" format="zip" /> 120 <when input="attribute_type" value="final_estimator" format="zip" />
121 <when input="attribute_type" value="best_estimator_" format="zip" /> 121 <when input="attribute_type" value="best_estimator_" format="zip" />
122 <when input="attribute_type" value="init_" format="zip" /> 122 <when input="attribute_type" value="init_" format="zip" />
123 <when input="attribute_type" value="classifier_" format="zip" /> 123 <when input="attribute_type" value="classifier_" format="zip" />
124 <when input="attribute_type" value="regressor_" format="zip" /> 124 <when input="attribute_type" value="regressor_" format="zip" />
125 <when input="attribute_type" value="save_weights" format="h5"/> 125 <when input="attribute_type" value="save_weights" format="h5" />
126 </change_format> 126 </change_format>
127 </data> 127 </data>
128 </outputs> 128 </outputs>
129 <tests> 129 <tests>
130 <test> 130 <test>
131 <param name="infile_object" value="GridSearchCV.zip" ftype="zip"/> 131 <param name="infile_object" value="GridSearchCV.zip" ftype="zip" />
132 <param name="attribute_type" value="best_score_"/> 132 <param name="attribute_type" value="best_score_" />
133 <output name="outfile" file="best_score_.tabular"/> 133 <output name="outfile" file="best_score_.tabular" />
134 </test> 134 </test>
135 <test> 135 <test>
136 <param name="infile_object" value="GridSearchCV.zip" ftype="zip"/> 136 <param name="infile_object" value="GridSearchCV.zip" ftype="zip" />
137 <param name="attribute_type" value="best_params_"/> 137 <param name="attribute_type" value="best_params_" />
138 <output name="outfile" file="best_params_.txt"/> 138 <output name="outfile" file="best_params_.txt" />
139 </test> 139 </test>
140 <test> 140 <test>
141 <param name="infile_object" value="GridSearchCV.zip" ftype="zip"/> 141 <param name="infile_object" value="GridSearchCV.zip" ftype="zip" />
142 <param name="attribute_type" value="best_estimator_"/> 142 <param name="attribute_type" value="best_estimator_" />
143 <output name="outfile" file="best_estimator_.zip" compare="sim_size" delta="10"/> 143 <output name="outfile" file="best_estimator_.zip" compare="sim_size" delta="10" />
144 </test>
145 <test>
146 <param name="infile_object" value="best_estimator_.zip" ftype="zip"/>
147 <param name="attribute_type" value="final_estimator"/>
148 <output name="outfile" file="final_estimator.zip" compare="sim_size" delta="10"/>
149 </test> 144 </test>
150 <test> 145 <test>
151 <param name="infile_object" value="best_estimator_.zip" ftype="zip"/> 146 <param name="infile_object" value="best_estimator_.zip" ftype="zip" />
152 <param name="attribute_type" value="named_steps"/> 147 <param name="attribute_type" value="final_estimator" />
153 <output name="outfile" file="named_steps.txt" compare="sim_size" delta="5"/> 148 <output name="outfile" file="final_estimator.zip" compare="sim_size" delta="10" />
154 </test> 149 </test>
155 <test> 150 <test>
156 <param name="infile_object" value="final_estimator.zip" ftype="zip"/> 151 <param name="infile_object" value="best_estimator_.zip" ftype="zip" />
157 <param name="attribute_type" value="feature_importances_"/> 152 <param name="attribute_type" value="named_steps" />
158 <output name="outfile" file="feature_importances_.tabular"/> 153 <output name="outfile" file="named_steps.txt" compare="sim_size" delta="5" />
159 </test> 154 </test>
160 <test> 155 <test>
161 <param name="infile_object" value="RFE.zip" ftype="zip"/> 156 <param name="infile_object" value="final_estimator.zip" ftype="zip" />
162 <param name="attribute_type" value="ranking_"/> 157 <param name="attribute_type" value="feature_importances_" />
163 <output name="outfile" file="ranking_.tabular"/> 158 <output name="outfile" file="feature_importances_.tabular" />
164 </test> 159 </test>
165 <test> 160 <test>
166 <param name="infile_object" value="LinearRegression02.zip" ftype="zip"/> 161 <param name="infile_object" value="RFE.zip" ftype="zip" />
167 <param name="attribute_type" value="get_params"/> 162 <param name="attribute_type" value="ranking_" />
168 <output name="outfile" value="get_params.tabular"/> 163 <output name="outfile" file="ranking_.tabular" />
169 </test> 164 </test>
170 <test> 165 <test>
171 <param name="infile_object" value="fitted_keras_g_regressor01.zip" ftype="zip"/> 166 <param name="infile_object" value="LinearRegression02.zip" ftype="zip" />
172 <param name="attribute_type" value="save_weights"/> 167 <param name="attribute_type" value="get_params" />
173 <output name="outfile" value="keras_save_weights01.h5" compare="sim_size" delta="5"/> 168 <output name="outfile" value="get_params.tabular" />
169 </test>
170 <test>
171 <param name="infile_object" value="fitted_keras_g_regressor01.zip" ftype="zip" />
172 <param name="attribute_type" value="save_weights" />
173 <output name="outfile" value="keras_save_weights01.h5" compare="sim_size" delta="5" />
174 </test> 174 </test>
175 </tests> 175 </tests>
176 <help> 176 <help>
177 <![CDATA[ 177 <![CDATA[
178 **What it does** 178 **What it does**
186 - ``GridSearchCV``. *best_estimator_* 186 - ``GridSearchCV``. *best_estimator_*
187 187
188 ]]> 188 ]]>
189 </help> 189 </help>
190 <expand macro="sklearn_citation"> 190 <expand macro="sklearn_citation">
191 <expand macro="skrebate_citation"/> 191 <expand macro="skrebate_citation" />
192 <expand macro="xgboost_citation"/> 192 <expand macro="xgboost_citation" />
193 <expand macro="imblearn_citation"/> 193 <expand macro="imblearn_citation" />
194 </expand> 194 </expand>
195 </tool> 195 </tool>