Mercurial > repos > bgruening > sklearn_feature_selection
comparison feature_selection.xml @ 5:2d681d0f9393 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
author | bgruening |
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date | Wed, 06 Jun 2018 17:43:13 -0400 |
parents | 44e26f8a82c6 |
children | b0d554b38770 |
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4:44e26f8a82c6 | 5:2d681d0f9393 |
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34 features_has_header = params["input_options"]["header1"] | 34 features_has_header = params["input_options"]["header1"] |
35 input_type = params["input_options"]["selected_input"] | 35 input_type = params["input_options"]["selected_input"] |
36 if input_type=="tabular": | 36 if input_type=="tabular": |
37 header = 'infer' if features_has_header else None | 37 header = 'infer' if features_has_header else None |
38 column_option = params["input_options"]["column_selector_options_1"]["selected_column_selector_option"] | 38 column_option = params["input_options"]["column_selector_options_1"]["selected_column_selector_option"] |
39 if column_option == "by_index_number": | 39 if column_option in ["by_index_number", "all_but_by_index_number"]: |
40 c = params["input_options"]["column_selector_options_1"]["col1"] | 40 c = params["input_options"]["column_selector_options_1"]["col1"] |
41 else: | 41 else: |
42 c = None | 42 c = None |
43 X, input_df = read_columns( | 43 X, input_df = read_columns( |
44 "$input_options.infile1", | 44 "$input_options.infile1", |
53 X = mmread(open("$input_options.infile1", 'r')) | 53 X = mmread(open("$input_options.infile1", 'r')) |
54 | 54 |
55 ## Read labels | 55 ## Read labels |
56 header = 'infer' if params["input_options"]["header2"] else None | 56 header = 'infer' if params["input_options"]["header2"] else None |
57 column_option = params["input_options"]["column_selector_options_2"]["selected_column_selector_option2"] | 57 column_option = params["input_options"]["column_selector_options_2"]["selected_column_selector_option2"] |
58 if column_option == "by_index_number": | 58 if column_option in ["by_index_number", "all_but_by_index_number"]: |
59 c = params["input_options"]["column_selector_options_2"]["col2"] | 59 c = params["input_options"]["column_selector_options_2"]["col2"] |
60 else: | 60 else: |
61 c = None | 61 c = None |
62 y = read_columns( | 62 y = read_columns( |
63 "$input_options.infile2", | 63 "$input_options.infile2", |