Mercurial > repos > bgruening > sklearn_generalized_linear
comparison generalized_linear.xml @ 24:b628de0d101f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
author | bgruening |
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date | Wed, 15 May 2019 07:40:56 -0400 |
parents | e3bc646e63b2 |
children | 9d3a024cf2da |
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23:e3bc646e63b2 | 24:b628de0d101f |
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17 import sys | 17 import sys |
18 import json | 18 import json |
19 import numpy as np | 19 import numpy as np |
20 import sklearn.linear_model | 20 import sklearn.linear_model |
21 import pandas | 21 import pandas |
22 import pickle | |
22 from scipy.io import mmread | 23 from scipy.io import mmread |
23 | 24 |
24 with open("$__tool_directory__/sk_whitelist.json", "r") as f: | 25 sys.path.insert(0, '$__tool_directory__') |
25 sk_whitelist = json.load(f) | 26 from utils import load_model, get_X_y |
26 exec(open("$__tool_directory__/utils.py").read(), globals()) | |
27 | 27 |
28 input_json_path = sys.argv[1] | 28 input_json_path = sys.argv[1] |
29 with open(input_json_path, "r") as param_handler: | 29 with open(input_json_path, "r") as param_handler: |
30 params = json.load(param_handler) | 30 params = json.load(param_handler) |
31 | 31 |