Mercurial > repos > bgruening > sklearn_nn_classifier

annotate keras_macros.xml @ 30:4db563e8d453 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 3c1e6c72303cfd8a5fd014734f18402b97f8ecb5
author bgruening
date Fri, 22 Sep 2023 17:31:58 +0000
parents 22f0b9db4ea1
children
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1 <macros>
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2 <token name="@KERAS_VERSION@">2.10.0</token>
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4 <xml name="macro_stdio">
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5 <stdio>
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6 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
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7 </stdio>
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8 </xml>
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10 <xml name="keras_optimizer_common" token_learning_rate="0.01">
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11 <section name="optimizer_options" title="Optimizer Advanced Options" expanded="false">
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12 <param argument="learning_rate" type="float" value="@LEARNING_RATE@" optional="true" label="Learning rate" help="float >= 0" />
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13 <yield />
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14 <!--param argument="clipnorm" type="float" value="" optional="true" label="clipnorm" help="float >= 0"/-->
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15 <!--param argument="clipvalue" type="float" value="" optional="true" label="clipvalue" help="float >= 0"/-->
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16 </section>
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17 </xml>
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19 <xml name="keras_optimizer_common_more" token_learning_rate="0.001">
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20 <expand macro="keras_optimizer_common" learning_rate="@LEARNING_RATE@">
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21 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="Float. The exponential decay rate for the 1st moment estimates." />
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22 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="Float. The exponential decay rate for the exponentially weighted infinity norm." />
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23 <param argument="epsilon" type="float" value="1e-7" label="epsilon" optional="true" help="A small constant for numerical stability." />
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24 <yield />
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25 </expand>
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26 </xml>
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28 <xml name="keras_activations" token_none="true" token_tanh="false">
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29 <param argument="activation" type="select" label="Activation function">
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30 <option value="linear" selected="@NONE@">None / linear (default)</option>
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31 <option value="softmax">softmax</option>
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32 <option value="elu">elu</option>
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33 <option value="selu">selu</option>
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34 <option value="softplus">softplus</option>
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35 <option value="softsign">softsign</option>
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36 <option value="relu">relu</option>
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37 <option value="tanh" selected="@TANH@">tanh</option>
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38 <option value="sigmoid">sigmoid</option>
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39 <option value="hard_sigmoid">hard_sigmoid</option>
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40 <option value="exponential">exponential</option>
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41 </param>
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42 </xml>
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44 <xml name="keras_initializers" token_argument="kernel_initializer" token_default_glorot_uniform="false" token_default_zeros="false" token_default_random_uniform="false" token_default_ones="false">
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45 <param argument="@ARGUMENT@" type="select" label="@ARGUMENT@">
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46 <option value="zeros" selected="@DEFAULT_ZEROS@">zero / zeros / Zeros</option>
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47 <option value="ones" selected="@DEFAULT_ONES@">one / ones / Ones</option>
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48 <option value="constant">constant / Constant</option>
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49 <option value="random_normal">normal / random_normal / RandomNormal</option>
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50 <option value="random_uniform" selected="@DEFAULT_RANDOM_UNIFORM@">uniform / random_uniform / RandomUniform</option>
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51 <option value="truncated_normal">truncated_normal / TruncatedNormal</option>
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52 <option value="orthogonal">orthogonal / Orthogonal</option>
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53 <option value="identity">identity / Identity</option>
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54 <option value="glorot_normal">glorot_normal</option>
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55 <option value="glorot_uniform" selected="@DEFAULT_GLOROT_UNIFORM@">glorot_uniform</option>
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56 <option value="he_normal">he_normal</option>
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57 <option value="he_uniform">he_uniform</option>
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58 <option value="lecun_normal">lecun_normal</option>
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59 <option value="lecun_uniform">lecun_uniform</option>
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60 </param>
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61 </xml>
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63 <xml name="keras_regularizers" token_argument="kernel_regularizer">
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64 <param argument="@ARGUMENT@" type="text" value="(0. , 0.)" optional="true" label="@ARGUMENT@"
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65 help="(l1, l2). l1/l2: float; L1/l2 regularization factor. (0., 0.) is equivalent to `None`" />
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66 </xml>
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68 <xml name="keras_constraints_options">
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69 <section name="constraint_options" title="Constraint Advanced Options" expanded="false">
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70 <yield />
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71 <param argument="axis" type="text" value="0" help="Integer or list of integers. axis along which to calculate weight norms">
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72 <sanitizer>
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73 <valid initial="default">
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74 <add value="[" />
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75 <add value="]" />
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76 </valid>
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77 </sanitizer>
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78 </param>
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79 </section>
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80 </xml>
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81
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82 <xml name="keras_constraints" token_argument="kernel_constraint">
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83 <conditional name="@ARGUMENT@">
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84 <param argument="constraint_type" type="select" label="@ARGUMENT@">
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85 <option value="None" selected="true">None (default)</option>
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86 <option value="MaxNorm">maxnorm / max_norm / MaxNorm</option>
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87 <option value="NonNeg">nonneg / non_neg / NonNeg</option>
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88 <option value="UnitNorm">unitnorm / unit_norm / UnitNorm</option>
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89 <option value="MinMaxNorm">min_max_norm / MinMaxNorm</option>
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90 </param>
27
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91 <when value="None" />
12
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92 <when value="MaxNorm">
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93 <expand macro="keras_constraints_options">
27
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94 <param argument="max_value" type="float" value="2" help="the maximum norm for the incoming weights." />
12
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95 </expand>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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96 </when>
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97 <when value="NonNeg">
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98 </when>
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99 <when value="UnitNorm">
27
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100 <expand macro="keras_constraints_options" />
12
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101 </when>
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102 <when value="MinMaxNorm">
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103 <expand macro="keras_constraints_options">
27
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104 <param argument="min_value" type="float" value="0." help="the minimum norm for the incoming weights." />
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105 <param argument="max_value" type="float" value="1." help="the maximum norm for the incoming weights." />
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106 <param argument="rate_max_value" type="float" value="1." help="rate for enforcing the constraint." />
12
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107 </expand>
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108 </when>
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109 </conditional>
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110 </xml>
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111
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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112 <xml name="keras_layer_types_core">
13
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113 <option value="Dense">Core -- Dense</option>
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114 <option value="Activation">Core -- Activation</option>
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115 <option value="Dropout">Core -- Dropout</option>
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116 <option value="Flatten">Core -- Flatten</option>
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117 <option value="Reshape">Core -- Reshape</option>
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118 <option value="Permute">Core -- Permute</option>
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119 <option value="RepeatVector">Core -- RepeatVector</option>
12
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120 <!--option value="Lambda">Lambda - Not supported</option-->
13
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121 <option value="ActivityRegularization">Core -- ActivityRegularization</option>
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122 <option value="Masking">Core -- Masking</option>
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123 <option value="SpatialDropout1D">Core -- SpatialDropout1D</option>
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124 <option value="SpatialDropout2D">Core -- SpatialDropout2D</option>
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125 <option value="SpatialDropout3D">Core -- SpatialDropout3D</option>
12
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126 </xml>
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127
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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128 <xml name="keras_layer_types_Convolutional">
13
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129 <option value="Conv1D">Convolutional -- Conv1D</option>
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130 <option value="Conv2D">Convolutional -- Conv2D</option>
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131 <option value="SeparableConv1D">Convolutional -- SeparableConv1D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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132 <option value="SeparableConv2D">Convolutional -- SeparableConv2D</option>
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133 <option value="DepthwiseConv2D">Convolutional -- DepthwiseConv2D</option>
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134 <option value="Conv2DTranspose">Convolutional -- Conv2DTranspose</option>
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135 <option value="Conv3D">Convolutional -- Conv3D</option>
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136 <option value="Conv3DTranspose">Convolutional -- Conv3DTranspose</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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137 <option value="Cropping1D">Convolutional -- Cropping1D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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138 <option value="Cropping2D">Convolutional -- Cropping2D</option>
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139 <option value="Cropping3D">Convolutional -- Cropping3D</option>
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140 <option value="UpSampling1D">Convolutional -- UpSampling1D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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141 <option value="UpSampling2D">Convolutional -- UpSampling2D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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142 <option value="UpSampling3D">Convolutional -- UpSampling3D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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143 <option value="ZeroPadding1D">Convolutional -- ZeroPadding1D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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144 <option value="ZeroPadding2D">Convolutional -- ZeroPadding2D</option>
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145 <option value="ZeroPadding3D">Convolutional -- ZeroPadding3D</option>
12
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146 </xml>
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147
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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148 <xml name="keras_layer_types_Pooling">
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149 <option value="MaxPooling1D">Pooling -- MaxPooling1D</option>
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150 <option value="MaxPooling2D">Pooling -- MaxPooling2D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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151 <option value="MaxPooling3D">Pooling -- MaxPooling3D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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152 <option value="AveragePooling1D">Pooling -- AveragePooling1D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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153 <option value="AveragePooling2D">Pooling -- AveragePooling2D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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154 <option value="AveragePooling3D">Pooling -- AveragePooling3D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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155 <option value="GlobalMaxPooling1D">Pooling -- GlobalMaxPooling1D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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156 <option value="GlobalAveragePooling1D">Pooling -- GlobalAveragePooling1D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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157 <option value="GlobalMaxPooling2D">Pooling -- GlobalMaxPooling2D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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158 <option value="GlobalAveragePooling2D">Pooling -- GlobalAveragePooling2D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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159 <option value="GlobalMaxPooling3D">Pooling -- GlobalMaxPooling3D</option>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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160 <option value="GlobalAveragePooling3D">Pooling -- GlobalAveragePooling3D</option>
12
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161 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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162
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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163 <xml name="keras_layer_types_locally_connected">
13
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164 <option value="LocallyConnected1D">Locally_connected -- LocallyConnected1D</option>
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165 <option value="LocallyConnected2D">Locally_connected -- LocallyConnected2D</option>
12
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166 </xml>
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167
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168 <xml name="keras_layer_types_recurrent">
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169 <option value="SimpleRNN">Recurrent -- SimpleRNN</option>
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170 <option value="GRU">Recurrent -- GRU</option>
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171 <option value="LSTM">Recurrent -- LSTM</option>
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172 <option value="ConvLSTM2D">Recurrent -- ConvLSTM2D</option>
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173 <option value="ConvLSTM2DCell">Recurrent -- ConvLSTM2DCell</option>
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174 <option value="SimpleRNNCell">Recurrent -- SimpleRNNCell</option>
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175 <option value="GRUCell">Recurrent -- GRUCell</option>
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176 <option value="LSTMCell">Recurrent -- LSTMCell</option>
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177 <option value="CuDNNGRU">Recurrent -- CuDNNGRU</option>
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178 <option value="CuDNNLSTM">Recurrent -- CuDNNLSTM</option>
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179 </xml>
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180
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181 <xml name="keras_layer_types_embedding">
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182 <option value="Embedding">Embedding -- Embedding</option>
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183 </xml>
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184
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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185 <xml name="keras_layer_types_advanced_activations">
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186 <option value="LeakyReLU">Advanced activations -- LeakyReLU</option>
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187 <option value="PReLU">Advanced activations -- PReLU</option>
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188 <option value="ELU">Advanced activations -- ELU</option>
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189 <option value="ThresholdedReLU">Advanced activations -- ThresholdedReLU</option>
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190 <option value="Softmax">Advanced activations -- Softmax</option>
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191 <option value="ReLU">Advanced activations -- ReLU</option>
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192 </xml>
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193
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194 <xml name="keras_layer_types_normalization">
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195 <option value="BatchNormalization">Normalization -- BatchNormalization</option>
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196 </xml>
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197
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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198 <xml name="keras_layer_types_noise">
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199 <option value="GaussianNoise">Noise -- GaussianNoise</option>
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200 <option value="GaussianDropout">Noise -- GaussianDropout</option>
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201 <option value="AlphaDropout">Noise -- AlphaDropout</option>
12
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202 </xml>
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203
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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204 <xml name="keras_layer_types_merge">
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205 <option value="Add">Merge -- Add</option>
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206 <option value="Subtract">Merge -- Subtract</option>
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207 <option value="Multiply">Merge -- Multiply</option>
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208 <option value="Average">Merge -- Average</option>
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209 <option value="Maximum">Merge -- Maximum</option>
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210 <option value="Minimum">Merge -- Minimum</option>
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211 <option value="Concatenate">Merge -- Concatenate</option>
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212 <option value="Dot">Merge -- Dot</option>
12
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213 </xml>
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214
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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215 <!--Core Layers-->
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216
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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217 <xml name="layer_Dense">
27
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218 <param argument="units" type="integer" value="" optional="false" label="units" help="Positive integer, dimensionality of the output space." />
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219 <expand macro="keras_activations" />
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220 <expand macro="simple_kwargs" help="For example: use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default." />
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221 <yield />
12
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222 </xml>
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223
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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224 <xml name="layer_Dropout">
27
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225 <param argument="rate" type="float" value="" min="0." max="1.0" help="Fraction of the input units to drop." />
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226 <expand macro="simple_kwargs" help="For example: noise_shape=None, seed=None. Leave blank for default." />
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227 <yield />
12
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228 </xml>
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229
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230 <xml name="layer_Flatten">
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231 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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232 <option value="channels_last">channels_last</option>
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233 <option value="channels_first">channels_first</option>
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234 </param>
27
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235 <yield />
12
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236 </xml>
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237
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238 <xml name="layer_Input">
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239 <param argument="shape" type="text" value="" help="A shape tuple (integer), not including the batch size.For instance, `shape=(32,)`" />
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240 <!--param argument="batch_shape" type="text" value="" optional="true" help="A shape tuple (integer), including the batch size.For instance, `batch_shape=(10, 32)`"/-->
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241 <param argument="name" type="text" value="" optional="true" help="An optional string name for the layer. Unique. autogenerated if it isn't provided." />
12
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242 <param argument="dtype" type="select" help="The data type expected by the input">
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243 <option value="float32" selected="true">float32</option>
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244 <option value="float64">float64</option>
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245 <option value="int32">int32</option>
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246 <option value="int64">int64</option>
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247 <!--TODO add more DTYPEs-->
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248 </param>
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249 <param argument="sparse" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
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250 <!--param argument="tensor" type="data" format="zip" help="Optional existing tensor to wrap into the `Input` layer."/ -->
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251 <yield />
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252 </xml>
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253
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254 <xml name="layer_Reshape">
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255 <param argument="target_shape" type="text" value="" help="Tuple of integers. Does not include the batch axis." />
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256 <yield />
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257 </xml>
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258
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259 <xml name="layer_Permute">
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260 <param argument="dims" type="text" value="" help="Tuple of integers. Permutation pattern, does not include the samples dimension.
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261 Indexing starts at 1. For instance, (2, 1) permutes the first and second dimension of the input." />
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262 <yield />
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263 </xml>
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264
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265 <xml name="layer_RepeatVector">
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266 <param argument="n" type="integer" value="" help="repetition factor" />
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267 </xml>
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268
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269 <xml name="layer_Lambda">
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270 <param argument="function" type="text" value="lambda x: " help="The function to be evaluated. Only lambda function is supported!" />
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271 <yield />
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272 </xml>
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273
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274 <xml name="layer_ActivityRegularization">
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275 <param argument="l1" type="float" value="0." min="0." help="L1 regularization factor (positive float)." />
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276 <param argument="l2" type="float" value="0." min="0." help="L2 regularization factor (positive float)." />
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277 <yield />
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278 </xml>
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279
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280 <xml name="layer_Masking">
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281 <param argument="mask_value" type="float" value="0." help="Masks a sequence by using a mask value to skip timesteps." />
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282 <yield />
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283 </xml>
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284
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285 <xml name="layer_SpatialDropout1D">
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286 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop." />
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287 <yield />
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288 </xml>
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289
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290 <xml name="layer_SpatialDropout2D">
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291 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop." />
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292 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default." />
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293 <yield />
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294 </xml>
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295
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296 <xml name="layer_SpatialDropout3D">
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297 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop." />
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298 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default." />
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299 <yield />
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300 </xml>
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301
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302 <!--Convolutional Layers-->
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303
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304 <xml name="layer_Conv1D">
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305 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
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306 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window." />
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307 <expand macro="keras_activations" />
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308 <expand macro="simple_kwargs" help="For example: strides=1, padding='valid', data_format='channels_last', dilation_rate=1, use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default." />
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309 <yield />
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310 </xml>
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311
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312 <xml name="layer_Conv2D">
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313 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
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314 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window." />
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315 <expand macro="keras_activations" />
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316 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, dilation_rate=(1, 1), use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default." />
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317 <yield />
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318 </xml>
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319
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320 <xml name="layer_SeparableConv1D">
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321 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
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322 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window." />
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323 <expand macro="keras_activations" />
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324 <expand macro="simple_kwargs" help="For example: strides=1, padding='valid', data_format='channels_last', dilation_rate=1, depth_multiplier=1, use_bias=True, depthwise_initializer='glorot_uniform', pointwise_initializer='glorot_uniform', bias_initializer='zeros', depthwise_regularizer=None, pointwise_regularizer=None, bias_regularizer=None, activity_regularizer=None, depthwise_constraint=None, pointwise_constraint=None, bias_constraint=None. Leave blank for default." />
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325 <yield />
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326 </xml>
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327
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328 <xml name="layer_SeparableConv2D">
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329 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
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330 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window." />
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331 <expand macro="keras_activations" />
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332 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, dilation_rate=(1, 1), depth_multiplier=1, use_bias=True, depthwise_initializer='glorot_uniform', pointwise_initializer='glorot_uniform', bias_initializer='zeros', depthwise_regularizer=None, pointwise_regularizer=None, bias_regularizer=None, activity_regularizer=None, depthwise_constraint=None, pointwise_constraint=None, bias_constraint=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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333 <yield />
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334 </xml>
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335
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336 <xml name="layer_DepthwiseConv2D">
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fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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337
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338 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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339 <expand macro="keras_activations" />
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340 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', depth_multiplier=1, data_format=None, use_bias=True, depthwise_initializer='glorot_uniform', bias_initializer='zeros', depthwise_regularizer=None, bias_regularizer=None, activity_regularizer=None, depthwise_constraint=None, bias_constraint=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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341 <yield />
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342 </xml>
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343
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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344 <xml name="layer_Conv2DTranspose">
27
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345 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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346 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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347 <expand macro="keras_activations" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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348 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', output_padding=None, data_format=None, dilation_rate=(1, 1), use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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349 <yield />
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350 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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351
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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352 <xml name="layer_Conv3D">
27
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353 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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354 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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355 <expand macro="keras_activations" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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356 <expand macro="simple_kwargs" help="For example: strides=(1, 1, 1), padding='valid', data_format=None, dilation_rate=(1, 1, 1), use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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357 <yield />
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358 </xml>
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359
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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360 <xml name="layer_Conv3DTranspose">
27
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361 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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362 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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363 <expand macro="keras_activations" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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364 <expand macro="simple_kwargs" help="For example: strides=(1, 1, 1), padding='valid', output_padding=None, data_format=None, activation=None, use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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365 <yield />
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366 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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367
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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368 <xml name="layer_Cropping1D">
27
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369 <param argument="cropping" type="text" value="(1, 1)" help="int or tuple of int (length 2) How many units should be trimmed off at the beginning and end of the cropping dimension (axis 1). If a single int is provided, the same value will be used for both." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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370 <yield />
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371 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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372
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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373 <xml name="layer_Cropping2D">
27
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374 <param argument="cropping" type="text" value="((0, 0), (0, 0))" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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375 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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376 <yield />
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377 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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378
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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379 <xml name="layer_Cropping3D">
27
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380 <param argument="cropping" type="text" value="((1, 1), (1, 1), (1, 1))" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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381 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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382 <yield />
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383 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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384
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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385 <xml name="layer_UpSampling1D">
27
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386 <param argument="size" type="integer" value="2" min="0" help="integer. Upsampling factor." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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387 <yield />
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388 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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389
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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390 <xml name="layer_UpSampling2D">
27
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391 <param argument="size" type="text" value="(2, 2)" help="int, or tuple of 2 integers. The upsampling factors for rows and columns." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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392 <expand macro="simple_kwargs" help="For example: data_format=None, interpolation='nearest'. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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393 <yield />
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394 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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395
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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396 <xml name="layer_UpSampling3D">
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397 <param argument="size" type="text" value="(2, 2, 2)" help="int, or tuple of 3 integers. The upsampling factors for dim1, dim2 and dim3." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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398 <expand macro="simple_kwargs" help="For example: data_format=None, interpolation='nearest'. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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399 <yield />
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400 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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401
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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402 <xml name="layer_ZeroPadding1D">
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403 <param argument="padding" type="text" value="1" help="int, or tuple of int (length 2)" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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404 <yield />
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405 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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406
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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407 <xml name="layer_ZeroPadding2D">
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408 <param argument="padding" type="text" value="(1, 1)" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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409 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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410 <yield />
12
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411 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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412
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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413 <xml name="layer_ZeroPadding3D">
27
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414 <param argument="padding" type="text" value="(1, 1, 1)" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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415 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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416 <yield />
12
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417 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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418
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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419 <!--Pooling Layers-->
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420
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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421 <xml name="layer_MaxPooling1D">
27
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422 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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423 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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424 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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425 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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426 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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427
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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428 <xml name="layer_MaxPooling2D">
27
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429 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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430 <param name="strides" type="text" value="" help="Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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431 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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432 <yield />
12
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433 </xml>
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434
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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435 <xml name="layer_MaxPooling3D">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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436 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3).
27
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437 (2, 2, 2) will halve the size of the 3D input in each dimension." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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438 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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439 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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440 <yield />
12
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441 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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442
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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443 <xml name="layer_AveragePooling1D">
27
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444 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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445 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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446 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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447 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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448 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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449
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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450 <xml name="layer_AveragePooling2D">
27
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451 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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452 <param name="strides" type="text" value="" help=" Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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453 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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454 <yield />
12
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455 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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456
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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457 <xml name="layer_AveragePooling3D">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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458 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3).
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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459 (2, 2, 2) will halve the size of the 3D input in each dimension." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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460 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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461 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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462 <yield />
12
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463 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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464
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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465 <xml name="layer_GlobalMaxPooling1D">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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466 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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467 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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468 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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469 </param>
27
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470 <yield />
12
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471 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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472
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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473 <xml name="layer_GlobalMaxPooling2D">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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474 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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475 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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476 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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477 </param>
27
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478 <yield />
12
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479 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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480
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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481 <xml name="layer_GlobalMaxPooling3D">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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482 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
483 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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484 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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485 </param>
27
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486 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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487 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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488
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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489 <xml name="layer_GlobalAveragePooling1D">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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490 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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491 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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492 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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493 </param>
27
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494 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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495 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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496
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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497 <xml name="layer_GlobalAveragePooling2D">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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498 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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499 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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500 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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501 </param>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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502 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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503 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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504
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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505 <xml name="layer_GlobalAveragePooling3D">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
506 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
507 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
508 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
509 </param>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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510 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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511 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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512
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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513 <!--Locally-connected Layers-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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514
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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515 <xml name="layer_LocallyConnected1D">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
516 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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517 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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518 <expand macro="keras_activations" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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519 <expand macro="simple_kwargs" help="For example: strides=1, padding='valid', data_format=None, use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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520 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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521 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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522
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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523 <xml name="layer_LocallyConnected2D">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
524 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
525 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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526 <expand macro="keras_activations" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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527 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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528 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
529 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
530
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
531 <!--Recurrent Layers-->
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
532
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
533 <xml name="layer_SimpleRNN">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
534 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
535 <expand macro="simple_kwargs" help="For example: activation='tanh', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, return_sequences=False, return_state=False, go_backwards=False, stateful=False, unroll=False. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
536 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
537 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
538
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
539 <xml name="layer_GRU">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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540 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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diff changeset
541 <expand macro="simple_kwargs" help="For example: activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, implementation=1, return_sequences=False, return_state=False, go_backwards=False, stateful=False, unroll=False, reset_after=False. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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542 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
543 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
544
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
545 <xml name="layer_LSTM">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
546 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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547 <expand macro="simple_kwargs" help="For example: activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, implementation=1, return_sequences=False, return_state=False, go_backwards=False, stateful=False, unroll=False. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
548 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
549 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
550
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
551 <xml name="layer_ConvLSTM2D">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
552 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
553 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of n integers, specifying the dimensions of the convolution window." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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554 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, dilation_rate=(1, 1), activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, return_sequences=False, go_backwards=False, stateful=False, dropout=0.0, recurrent_dropout=0.0. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
555 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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556 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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557
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
558 <xml name="layer_ConvLSTM2DCell">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
559 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
560 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of n integers, specifying the dimensions of the convolution window." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
561 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, dilation_rate=(1, 1), activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
562 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
563 </xml>
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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564
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
565 <xml name="layer_SimpleRNNCell">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
566 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
567 <expand macro="simple_kwargs" help="For example: activation='tanh', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
568 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
569 </xml>
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
570
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
571 <xml name="layer_GRUCell">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
572 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
573 <expand macro="simple_kwargs" help="For example: activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, implementation=1, reset_after=False. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
574 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
575 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
576
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
577 <xml name="layer_LSTMCell">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
578 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
579 <expand macro="simple_kwargs" help="For example: activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, implementation=1. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
580 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
581 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
582
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
583 <xml name="layer_CuDNNGRU">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
584 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
585 <expand macro="simple_kwargs" help="For example: kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, return_sequences=False, return_state=False, stateful=False. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
586 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
587 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
588
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
589 <xml name="layer_CuDNNLSTM">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
590 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
591 <expand macro="simple_kwargs" help="For example: kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, return_sequences=False, return_state=False, stateful=False. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
592 <yield />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
593 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
594
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents: 12
diff changeset
595
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
596 <!--Embedding Layers-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
597
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
598 <xml name="layer_Embedding">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
599 <param argument="input_dim" type="integer" value="" min="0" help="int > 0. Size of the vocabulary, i.e. maximum integer index + 1." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
600 <param argument="output_dim" type="integer" value="" min="0" help="int >= 0. Dimension of the dense embedding." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
601 <expand macro="simple_kwargs" help="For example: embeddings_initializer='uniform', embeddings_regularizer=None, activity_regularizer=None, embeddings_constraint=None, mask_zero=False, input_length=None. Leave blank for default." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
602 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
603 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
604
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
605 <!--Merge Layers-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
606
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
607 <xml name="layer_merge">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
608 <param name="merging_layers" type="text" value="[ ]" label="Type the layer index numbers in a list" help="List of numbers">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
609 <sanitizer>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
610 <valid initial="default">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
611 <add value="[" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
612 <add value="]" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
613 </valid>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
614 </sanitizer>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
615 </param>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
616 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
617 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
618
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
619 <xml name="layer_Concatenate" token_type="integer" token_default_value="-1" token_help="Axis along which to concatenate.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
620 <expand macro="layer_merge">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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diff changeset
621 <param argument="axis" type="@TYPE@" value="@DEFAULT_VALUE@" help="@HELP@" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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622 </expand>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
623 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
624 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
625
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
626 <xml name="layer_Dot">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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627 <expand macro="layer_Concatenate" type="text" default_value="" help="Integer or tuple of integers, axis or axes along which to take the dot product.">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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628 <param argument="normalize" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to L2-normalize samples along the dot product axis before taking the dot product?" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
629 </expand>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
630 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
631 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
632
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
633 <!--Advanced Activations Layers-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
634
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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635 <xml name="layer_LeakyReLU">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
636 <param argument="alpha" type="float" value="0.3" min="0." help="float >= 0. Negative slope coefficient." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
637 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
638 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
639
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
640 <xml name="layer_PReLU">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
641 <expand macro="keras_initializers" argument="alpha_initializer" default_zeros="true" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
642 <expand macro="keras_regularizers" argument="alpha_regularizer" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
643 <expand macro="keras_constraints" argument="alpha_constraint" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
644 <param argument="shared_axes" type="text" value="" help="the axes along which to share learnable parameters for the activation function. E.g. [1, 2]">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
645 <sanitizer>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
646 <valid initial="default">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
647 <add value="[" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
648 <add value="]" />
12
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649 </valid>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
650 </sanitizer>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
651 </param>
27
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diff changeset
652 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
653 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
654
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
655 <xml name="layer_ELU">
27
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diff changeset
656 <param argument="alpha" type="float" value="1.0" help="scale for the negative factor." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
657 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
658 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
659
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
660 <xml name="layer_ThresholdedReLU">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
661 <param argument="theta" type="float" value="1.0" help="float >= 0. Threshold location of activation." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
662 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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663 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
664
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
665 <xml name="layer_Softmax">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
666 <param argument="axis" type="integer" value="-1" help="Integer, axis along which the softmax normalization is applied." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
667 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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668 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
669
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
670 <xml name="layer_ReLU">
27
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diff changeset
671 <param argument="max_value" type="float" value="" min="0." help="float >= 0. Maximum activation value." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
672 <param argument="negative_slope" type="float" value="0." min="0." help="float >= 0. Negative slope coefficient." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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673 <param argument="threshold_max_value" type="float" value="0." help="float. Threshold value for thresholded activation." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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674 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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675 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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676
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
677 <!--Normalization Layers-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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678
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
679 <xml name="layer_BatchNormalization">
27
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diff changeset
680 <expand macro="simple_kwargs" help="For example: axis=-1, momentum=0.99, epsilon=0.001, center=True, scale=True, beta_initializer='zeros', gamma_initializer='ones', moving_mean_initializer='zeros', moving_variance_initializer='ones', beta_regularizer=None, gamma_regularizer=None, beta_constraint=None, gamma_constraint=None. Leave blank for default." />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
681 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
682
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
683 <!--Noise layers-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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684
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
685 <xml name="layer_GaussianNoise">
27
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diff changeset
686 <param argument="stddev" type="float" value="" help="float, standard deviation of the noise distribution." />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
687 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
688
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
689 <xml name="layer_GaussianDropout">
27
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diff changeset
690 <param argument="rate" type="float" value="" help="drop probability, (as with `Dropout`). The multiplicative noise will have standard deviation `sqrt(rate / (1 - rate))`" />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
691 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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diff changeset
692
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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diff changeset
693 <xml name="layer_AlphaDropout">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
694 <expand macro="layer_Dropout" />
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
695 </xml>
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
696
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
697 <xml name="inbound_nodes_index">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
698 <param name="inbound_nodes" type="integer" value="" label="Type the index number of input layer"
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
699 help="Find the index number at the left top corner of layer configuration block" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
700 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
701
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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diff changeset
702 <!--Simple key words text parameters, conbined to reduce UI latency-->
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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parents: 12
diff changeset
703
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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diff changeset
704 <xml name="simple_kwargs" token_help="Leave blank for default.">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
705 <param argument="kwargs" type="text" value="" optional="true" label="Type in key words arguments if different from the default" help="@HELP@">
25
4cc980df6265 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8850f42c2c3763e614f7454c9c006f3d2ff572c0
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parents: 17
diff changeset
706 <sanitizer>
4cc980df6265 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8850f42c2c3763e614f7454c9c006f3d2ff572c0
bgruening
parents: 17
diff changeset
707 <valid initial="default">
4cc980df6265 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8850f42c2c3763e614f7454c9c006f3d2ff572c0
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diff changeset
708 <add value="&apos;" />
4cc980df6265 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8850f42c2c3763e614f7454c9c006f3d2ff572c0
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parents: 17
diff changeset
709 </valid>
4cc980df6265 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8850f42c2c3763e614f7454c9c006f3d2ff572c0
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parents: 17
diff changeset
710 </sanitizer>
4cc980df6265 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8850f42c2c3763e614f7454c9c006f3d2ff572c0
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diff changeset
711 </param>
13
fbc38059bb8f "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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diff changeset
712 </xml>
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
713
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
714 <!-- Keras CallBacks -->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
715
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
716 <xml name="keras_callbacks">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
717 <repeat name="callbacks" min="1" max="5" title="callback">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
718 <conditional name="callback_selection">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
719 <param name="callback_type" type="select" label="Choose a callback">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
720 <option value="None" selected="true">None</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
721 <option value="EarlyStopping">EarlyStopping -- Stop training when a monitored quantity has stopped improving</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
722 <!--option value="KerasTensorBoard">TensorBoard</option-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
723 <!--option value="KerasLearningRateScheduler">LearningRateScheduler</option-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
724 <!--option value="RemoteMonitor">RemoteMonitor - Stream events to a server</option> -->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
725 <!--option value="ModelCheckpoint">ModelCheckpoint - Save the model after every epoch</option>-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
726 <option value="TerminateOnNaN">TerminateOnNaN -- Terminates training when a NaN loss is encountered.</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
727 <option value="ReduceLROnPlateau">ReduceLROnPlateau -- Reduce learning rate when a metric has stopped improving</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
728 <option value="CSVLogger">CSVLogger -- Streams epoch results to a csv file</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
729 </param>
27
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parents: 25
diff changeset
730 <when value="None" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
731 <when value="EarlyStopping">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
732 <expand macro="keras_callback_common_options">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
733 <param argument="min_delta" type="float" value="0" optional="true" help="Minimum change in the monitored quantity to qualify as an improvement." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
734 <param argument="patience" type="integer" value="0" min="0" help="Number of epochs with no improvement after which training will be stopped." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
735 <param argument="baseline" type="float" value="" optional="true" help="Baseline value for the monitored quantity to reach. Training will stop if the model doesn't show improvement over the baseline." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
736 <param argument="restore_best_weights" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether to restore model weights from the epoch with the best value of the monitored quantity" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
737 </expand>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
738 </when>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
739 <!--when value="TensorBoard">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
740 <param argument="histogram_freq" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
741 <param argument="batch_size" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
742 <param argument="write_graph" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
743 <param argument="write_grads" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
744 <param argument="write_images" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
745 <param argument="embeddings_layer_names" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
746 <param argument="embeddings_metadata" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
747 <param argument="embeddings_data" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
748 <param argument="update_freq" />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
749 </when-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
750 <!--when value="RemoteMonitor">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
751 <param argument="root" type="text" value="http://localhost:9000" help="Root url of the target server." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
752 <param argument="path" type="text" value="/publish/epoch/end/" help="Path relative to root to which the events will be sent. E.g., root + '/publish/epoch/end/'" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
753 <param argument="field" type="text" value="data" optional="true" help="JSON field under which the data will be stored. The field is used only if the payload is sent within a form (i.e. send_as_json is set to False)." />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
754 <param argument="headers" type="text" value="" optional="true" help="Dictionary; optional custom HTTP headers.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
755 <sanitizer>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
756 <valid initial="default">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
757 <add value="{" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
758 <add value="}" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
759 </valid>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
760 </sanitizer>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
761 </param>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
762 <param argument="send_as_json" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether the request should be send as application/json." />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
763 </when>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
764 <when value="ModelCheckpoint">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
765 <expand macro="keras_callback_common_options">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
766 <param argument="save_best_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="If True, the latest best model according to the quantity monitored will not be overwritten." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
767 <param argument="save_weights_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" help="If True, then only the model's weights will be saved, else the full model is saved." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
768 <param argument="period" type="integer" value="1" min="1" help="Interval (number of epochs) between checkpoints." />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
769 </expand>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
770 </when>-->
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
771 <when value="TerminateOnNaN" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
772 <when value="ReduceLROnPlateau">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
773 <expand macro="keras_callback_common_options">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
774 <param argument="factor" type="float" value="0.1" help="Factor by which the learning rate will be reduced. new_learning_rate = learning_rate * factor" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
775 <param argument="patience" type="integer" value="10" help="Number of epochs with no improvement after which learning rate will be reduced." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
776 <param argument="min_delta" type="float" value="0.0001" help="Threshold for measuring the new optimum, to only focus on significant changes." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
777 <param argument="cooldown" type="integer" value="0" help="Number of epochs to wait before resuming normal operation after learning_rate has been reduced." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
778 <param argument="min_lr" type="float" value="0" help="Lower bound on the learning rate." />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
779 </expand>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
780 </when>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
781 <when value="CSVLogger" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
782 </conditional>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
783 </repeat>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
784 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
785
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
786 <xml name="keras_callback_common_options">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
787 <param argument="monitor" type="select" help="Quantity to be monitored.">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
788 <option value="val_loss" selected="true">val_loss</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
789 <option value="loss">loss</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
790 </param>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
791 <param argument="mode" type="select">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
792 <option value="auto" selected="true">auto -- the direction is automatically inferred from the name of the monitored quantity</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
793 <option value="min">min -- training will stop when the quantity monitored has stopped decreasing</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
794 <option value="max">max -- training will stop when the quantity monitored has stopped increasing</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
795 </param>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
796 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
797 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
798
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
799 <!--Batch online data generators-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
800
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
801 <xml name="params_fasta_dna_batch_generator">
27
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diff changeset
802 <param argument="seq_length" type="integer" value="1000" optional="true" help="Integer. Sequence length or number of bases." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
803 <param argument="shuffle" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" help="Whether to shuffle the data between epochs." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
804 <param argument="seed" type="integer" value="" optional="true" help="Integer, random seed for data shuffling" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
805 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
806
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
807 <xml name="params_fasta_protein_batch_generator">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
808 <expand macro="params_fasta_dna_batch_generator" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
809 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
810
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
811 <xml name="params_genomic_interval_batch_generator">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
812 <expand macro="params_fasta_dna_batch_generator" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
813 <param argument="blacklist_regions" type="select" help="Tabix-indexed list of regions from which we should not output sequences">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
814 <option value="hg38" selected="true">hg38</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
815 <option value="hg19">hg19</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
816 </param>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
817 <param argument="center_bin_to_predict" type="integer" value="200" optional="true" help="Query the tabix-indexed file for a region of length." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
818 <param argument="feature_thresholds" type="float" value="0.5" optional="true" help="Threshold values to determine target value." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
819 <param argument="random_state" type="integer" value="" optional="true" help="Random seed number, to control the sample position in each invertal." />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
820 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
821
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
822 <xml name="params_image_batch_generator">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
823 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
824
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
825
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
826 <!--composite params macro-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
827
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
828 <xml name="keras_compile_params_section">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
829 <section name="compile_params" title="Compile Parameters" expanded="true">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
830 <param name="loss" type="select" label="Select a loss function">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
831 <option value="binary_crossentropy" selected="true">binary_crossentropy</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
832 <option value="mean_squared_error">mse / MSE/ mean_squared_error</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
833 <option value="mean_absolute_error">mae / MAE / mean_absolute_error</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
834 <option value="mean_absolute_percentage_error">mape / MAPE / mean_absolute_percentage_error</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
835 <option value="mean_squared_logarithmic_error">msle / MSLE / mean_squared_logarithmic_error</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
836 <option value="squared_hinge">squared_hinge</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
837 <option value="hinge">hinge</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
838 <option value="categorical_hinge">categorical_hinge</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
839 <option value="logcosh">logcosh</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
840 <option value="categorical_crossentropy">categorical_crossentropy</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
841 <option value="sparse_categorical_crossentropy">sparse_categorical_crossentropy</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
842 <option value="kullback_leibler_divergence">kld / KLD / kullback_leibler_divergence</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
843 <option value="poisson">poisson</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
844 <option value="cosine_proximity">cosine / cosine_proximity</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
845 </param>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
846 <conditional name="optimizer_selection">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
847 <param name="optimizer_type" type="select" label="Select an optimizer">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
848 <option value="RMSprop" selected="true">RMSprop - RMSProp optimizer </option>
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
849 <option value="SGD">SGD - Stochastic gradient descent optimizer </option>
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
850 <option value="Adagrad">Adagrad - Adagrad optimizer </option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
851 <option value="Adadelta">Adadelta - Adadelta optimizer </option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
852 <option value="Adam">Adam - Adam optimizer </option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
853 <option value="Adamax">Adamax - A variant of Adam based on the infinity norm </option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
854 <option value="Nadam">Nadam - Nesterov Adam optimizer </option>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
855 <option value="Ftrl">Ftrl - Ftrl optimizer </option>
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
856 </param>
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
857 <when value="RMSprop">
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
858 <expand macro="keras_optimizer_common" learning_rate="0.001">
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
859 <param argument="rho" type="float" value="0.9" optional="true" label="rho" help="Float. Discounting factor for the history/coming gradient." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
860 <param argument="momentum" type="float" value="0" optional="true" label="momentum"
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
861 help="Float." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
862 <param argument="epsilon" type="float" value="1e-7" label="epsilon" optional="true" help="A small constant for numerical stability." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
863 <param argument="centered" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="centered"
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
864 help="If True, gradients are normalized by the estimated variance of the gradient; if False, by the uncentered second moment." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
865 </expand>
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
866 </when>
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
867 <when value="SGD">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
868 <expand macro="keras_optimizer_common">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
869 <param argument="momentum" type="float" value="0" optional="true" label="Momentum"
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
870 help="float >= 0. Parameter that accelerates SGD in the relevant direction and dampens oscillations." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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diff changeset
871 <param argument="nesterov" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply Nesterov momentum" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
872 </expand>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
873 </when>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
874 <when value="Adagrad">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
875 <expand macro="keras_optimizer_common" learning_rate="0.001">
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
876 <param argument="initial_accumulator_value" type="float" value="0.1" optional="true" label="initial_accumulator_value" help="Float, &lt;= 0." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
877 <param argument="epsilon" type="float" value="1e-7" label="epsilon" optional="true" help="A small constant for numerical stability." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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diff changeset
878 </expand>
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
879 </when>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
880 <when value="Adadelta">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents: 25
diff changeset
881 <expand macro="keras_optimizer_common" learning_rate="0.001">
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
882 <param argument="rho" type="float" value="0.95" optional="true" label="rho" help="Float, &gt;= 0. The decay rate." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
883 <param argument="epsilon" type="float" value="1e-7" label="epsilon" optional="true" help="A small constant for numerical stability." />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
884 </expand>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
885 </when>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
886 <when value="Adam">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
887 <expand macro="keras_optimizer_common_more" learning_rate="0.001">
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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888 <param argument="amsgrad" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply the AMSGrad variant?"
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
889 help="Refer to paper `On the Convergence of Adam and Beyond`" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
890 </expand>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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891 </when>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
892 <when value="Adamax">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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diff changeset
893 <expand macro="keras_optimizer_common_more" learning_rate="0.001" />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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894 </when>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
895 <when value="Nadam">
27
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diff changeset
896 <expand macro="keras_optimizer_common_more" learning_rate="0.001" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
897 </when>
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
898 <when value="Ftrl">
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
899 <expand macro="keras_optimizer_common" learning_rate="0.001">
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
900 <param argument="learning_rate_power" type="float" value="-0.5" optional="true" label="learning_rate_power" help="Float, &gt;= 0." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
901 <param argument="initial_accumulator_value" type="float" value="0.1" optional="true" label="initial_accumulator_value" help="Float, &lt;= 0." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
902 <param argument="l1_regularization_strength" type="float" value="0." optional="true" label="l1_regularization_strength" help="Float, &gt;= 0." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
903 <param argument="l2_regularization_strength" type="float" value="0." optional="true" label="l2_regularization_strength" help="Float, &gt;= 0." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
904 <param argument="l2_shrinkage_regularization_strength" type="float" value="0." optional="true" label="l2_shrinkage_regularization_strength" help="Float, &gt;= 0." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
905 <param argument="beta" type="float" value="0." optional="true" label="beta" help="Float." />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
906 </expand>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
907 </when>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
908 </conditional>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
909 <param name="metrics" type="select" optional="true" multiple="true" label="Select metrics">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
910 <option value="acc" selected="true">acc / accruracy</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
911 <option value="binary_accuracy">binary_accuracy</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
912 <option value="categorical_accuracy">categorical_accuracy</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
913 <option value="sparse_categorical_accuracy">sparse_categorical_accuracy</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
914 <option value="mse">mse / MSE / mean_squared_error</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
915 <option value="mae">mae / MAE / mean_absolute_error</option>
25
4cc980df6265 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8850f42c2c3763e614f7454c9c006f3d2ff572c0
bgruening
parents: 17
diff changeset
916 <option value="mape">mape / MAPE / mean_absolute_percentage_error</option>
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
917 <option value="cosine_proximity">cosine_proximity</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
918 <option value="cosine">cosine</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
919 <option value="none">none</option>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
920 </param>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
921 </section>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
922 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
923
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
924 <xml name="keras_fit_params_section">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
925 <section name="fit_params" title="Fit Parameters" expanded="true">
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
926 <param name="epochs" type="integer" value="1" min="1" label="epochs" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
927 <param name="batch_size" type="integer" value="32" optional="true" label="batch_size" help="Integer or blank for 32" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
928 <param name="steps_per_epoch" type="integer" value="" optional="true" label="steps_per_epoch" help="The number of steps (batches of samples) before declaring one epoch finished and starting the next epoch. The default None is equal to the number of samples in your dataset divided by the batch size, or 1 if that cannot be determined." />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
929 <yield />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
930 <param name="validation_steps" type="integer" value="" optional="true" label="validation_steps" help="Default None. Total number of steps (batches of samples) to validate before stopping." />
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
931 <!--`validation_freq` will be available in next keras version-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
932 <!--param name="validation_freq" type="integer" value="1" optional="true" label="validation_freq" help="Integer only at current moment. If an integer, specifies how many training epochs to run before a new validation run is performed."/-->
27
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
933 <expand macro="keras_callbacks" />
22f0b9db4ea1 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 25
diff changeset
934 <param name="verbose" type="integer" value="1" optional="true" label="verbose" help="0, 1, or 2. Verbosity mode. 0 = silent, 1 = progress bar, 2 = one line per epoch." />
12
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
935 </section>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
936 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
937
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
938 <!--Citation-->
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
939 <xml name="keras_citation">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
940 <citation type="bibtex">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
941 @misc{chollet2015keras,
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
942 title={Keras},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
943 url={https://keras.io},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
944 author={Chollet, Fran\c{c}ois and others},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
945 year={2015},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
946 howpublished={https://keras.io},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
947 }
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
948 </citation>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
949 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
950
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
951 <xml name="tensorflow_citation">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
952 <citation type="bibtex">
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
953 @misc{tensorflow2015-whitepaper,
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
954 title={ {TensorFlow}: Large-Scale Machine Learning on Heterogeneous Systems},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
955 url={https://www.tensorflow.org/},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
956 note={Software available from tensorflow.org},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
957 author={
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
958 Mart\'{\i}n~Abadi and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
959 Ashish~Agarwal and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
960 Paul~Barham and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
961 Eugene~Brevdo and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
962 Zhifeng~Chen and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
963 Craig~Citro and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
964 Greg~S.~Corrado and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
965 Andy~Davis and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
966 Jeffrey~Dean and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
967 Matthieu~Devin and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
968 Sanjay~Ghemawat and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
969 Ian~Goodfellow and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
970 Andrew~Harp and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
971 Geoffrey~Irving and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
972 Michael~Isard and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
973 Yangqing Jia and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
974 Rafal~Jozefowicz and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
975 Lukasz~Kaiser and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
976 Manjunath~Kudlur and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
977 Josh~Levenberg and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
978 Dandelion~Man\'{e} and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
979 Rajat~Monga and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
980 Sherry~Moore and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
981 Derek~Murray and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
982 Chris~Olah and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
983 Mike~Schuster and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
984 Jonathon~Shlens and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
985 Benoit~Steiner and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
986 Ilya~Sutskever and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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987 Kunal~Talwar and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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988 Paul~Tucker and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
989 Vincent~Vanhoucke and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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990 Vijay~Vasudevan and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
991 Fernanda~Vi\'{e}gas and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
992 Oriol~Vinyals and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
993 Pete~Warden and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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994 Martin~Wattenberg and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
995 Martin~Wicke and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
996 Yuan~Yu and
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
997 Xiaoqiang~Zheng},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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998 year={2015},
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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999 }
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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1000 </citation>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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1001 </xml>
d0efc68a3ddb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1002
25
4cc980df6265 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8850f42c2c3763e614f7454c9c006f3d2ff572c0
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diff changeset
1003 </macros>