Mercurial > repos > bgruening > sklearn_numeric_clustering
diff numeric_clustering.xml @ 24:abb5a3f256e3 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
author | bgruening |
---|---|
date | Tue, 14 May 2019 18:11:02 -0400 |
parents | 9d234733ccfd |
children | 37e193b3fdd7 |
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--- a/numeric_clustering.xml Sun Dec 30 01:55:30 2018 -0500 +++ b/numeric_clustering.xml Tue May 14 18:11:02 2019 -0400 @@ -16,12 +16,16 @@ <![CDATA[ import sys import json +import numpy as np import sklearn.cluster import pandas from sklearn import metrics from scipy.io import mmread -exec(open("$__tool_directory__/utils.py").read(), globals()) +sys.path.insert(0, '$__tool_directory__') +from utils import read_columns + +N_JOBS = int(__import__('os').environ.get('GALAXY_SLOTS', 1)) input_json_path = sys.argv[1] with open(input_json_path, "r") as param_handler: @@ -56,8 +60,7 @@ header=header, parse_dates=True, encoding=None, - tupleize_cols=False -) + tupleize_cols=False) #end if prediction = cluster_object.fit_predict( data_matrix )