Mercurial > repos > bgruening > sklearn_numeric_clustering

diff numeric_clustering.xml @ 15:f02f05990cc9 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
author: bgruening
date: Fri, 13 Jul 2018 03:55:06 -0400
parents: 6bbf5cb20652
children: 6ba8d7af7e7a
--- a/numeric_clustering.xml	Tue Jul 10 03:11:22 2018 -0400
+++ b/numeric_clustering.xml	Fri Jul 13 03:55:06 2018 -0400
@@ -25,7 +25,9 @@
 @COLUMNS_FUNCTION@
 
 input_json_path = sys.argv[1]
-params = json.load(open(input_json_path, "r"))
+with open(input_json_path, "r") as param_handler:
+    params = json.load(param_handler)
+
 
 selected_algorithm = params["input_types"]["algorithm_options"]["selected_algorithm"]
 
@@ -36,7 +38,7 @@
 cluster_object.set_params(**options)
 
 #if $input_types.selected_input_type == "sparse":
-data_matrix = mmread(open("$infile", 'r'))
+data_matrix = mmread("$infile")
 #else:
 data = pandas.read_csv("$infile", sep='\t', header=0, index_col=None, parse_dates=True, encoding=None, tupleize_cols=False )
 header = 'infer' if params["input_types"]["header"] else None