Mercurial > repos > bgruening > sklearn_regression_metrics

diff regression_metrics.xml @ 28:0cc5098a9bff draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
author bgruening
date Tue, 13 Apr 2021 19:13:15 +0000
parents 28d51b976c29
children 642452aeed0d
line wrap: on
line diff
--- a/regression_metrics.xml	Fri Oct 02 08:57:30 2020 +0000
+++ b/regression_metrics.xml	Tue Apr 13 19:13:15 2021 +0000
@@ -1,10 +1,10 @@
-<tool id="sklearn_regression_metrics" name="Calculate metrics" version="@VERSION@">
+<tool id="sklearn_regression_metrics" name="Calculate metrics" version="@VERSION@" profile="20.05">
     <description>for regression performance</description>
     <macros>
         <import>main_macros.xml</import>
     </macros>
-    <expand macro="python_requirements"/>
-    <expand macro="macro_stdio"/>
+    <expand macro="python_requirements" />
+    <expand macro="macro_stdio" />
     <version_command>echo "@VERSION@"</version_command>
     <command>
         <![CDATA[
@@ -80,38 +80,38 @@
                 <option value="r2_score">r2_score - R^2 (coefficient of determination) regression score function</option>
             </param>
             <when value="explained_variance_score">
-                <expand macro="clf_inputs"/>
+                <expand macro="clf_inputs" />
                 <!--section name="options" title="Advanced Options" expanded="False">
                     <!- -sample_weight- ->
                     <!- -multioutput- ->
                 </section-->
             </when>
             <when value="mean_absolute_error">
-                <expand macro="clf_inputs"/>
+                <expand macro="clf_inputs" />
                 <!--section name="options" title="Advanced Options" expanded="False">
                     <!- -sample_weight- ->
                     <!- -multioutput- ->
                 </section-->
             </when>
             <when value="mean_squared_error">
-                <expand macro="clf_inputs"/>
+                <expand macro="clf_inputs" />
                 <!--section name="options" title="Advanced Options" expanded="False">
                     <!- -sample_weight- ->
                     <!- -multioutput- ->
                 </section-->
             </when>
             <when value="mean_squared_log_error">
-                <expand macro="clf_inputs"/>
+                <expand macro="clf_inputs" />
                 <!--section name="options" title="Advanced Options" expanded="False">
                     <!- -sample_weight- ->
                     <!- -multioutput- ->
                 </section-->
             </when>
             <when value="median_absolute_error">
-                <expand macro="clf_inputs"/>
+                <expand macro="clf_inputs" />
             </when>
             <when value="r2_score">
-                <expand macro="clf_inputs"/>
+                <expand macro="clf_inputs" />
                 <!--section name="options" title="Advanced Options" expanded="False">
                     <!- -sample_weight- ->
                     <!- -multioutput- ->
@@ -120,70 +120,70 @@
         </conditional>
     </inputs>
     <outputs>
-        <data format="txt" name="outfile"/>
+        <data format="txt" name="outfile" />
     </outputs>
     <tests>
         <test>
-            <param name="selected_metric" value="explained_variance_score"/>
-            <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header1" value="True"/>
-            <param name="col1" value="1"/>
-            <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header2" value="True"/>
-            <param name="col2" value="2"/>
-            <output name="outfile" file="regression_metrics_result01"/>
+            <param name="selected_metric" value="explained_variance_score" />
+            <param name="infile1" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header1" value="True" />
+            <param name="col1" value="1" />
+            <param name="infile2" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header2" value="True" />
+            <param name="col2" value="2" />
+            <output name="outfile" file="regression_metrics_result01" />
         </test>
         <test>
-            <param name="selected_metric" value="mean_absolute_error"/>
-            <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header1" value="True"/>
-            <param name="col1" value="1"/>
-            <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header2" value="True"/>
-            <param name="col2" value="2"/>
-            <output name="outfile" file="regression_metrics_result02"/>
+            <param name="selected_metric" value="mean_absolute_error" />
+            <param name="infile1" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header1" value="True" />
+            <param name="col1" value="1" />
+            <param name="infile2" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header2" value="True" />
+            <param name="col2" value="2" />
+            <output name="outfile" file="regression_metrics_result02" />
         </test>
         <test>
-            <param name="selected_metric" value="mean_squared_error"/>
-            <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header1" value="True"/>
-            <param name="col1" value="1"/>
-            <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header2" value="True"/>
-            <param name="col2" value="2"/>
-            <output name="outfile" file="regression_metrics_result03"/>
+            <param name="selected_metric" value="mean_squared_error" />
+            <param name="infile1" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header1" value="True" />
+            <param name="col1" value="1" />
+            <param name="infile2" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header2" value="True" />
+            <param name="col2" value="2" />
+            <output name="outfile" file="regression_metrics_result03" />
         </test>
         <test>
-            <param name="selected_metric" value="mean_squared_log_error"/>
-            <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header1" value="True"/>
-            <param name="col1" value="1"/>
-            <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header2" value="True"/>
-            <param name="col2" value="2"/>
-            <output name="outfile" file="regression_metrics_result04"/>
+            <param name="selected_metric" value="mean_squared_log_error" />
+            <param name="infile1" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header1" value="True" />
+            <param name="col1" value="1" />
+            <param name="infile2" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header2" value="True" />
+            <param name="col2" value="2" />
+            <output name="outfile" file="regression_metrics_result04" />
         </test>
         <test>
-            <param name="selected_metric" value="median_absolute_error"/>
-            <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header1" value="True"/>
-            <param name="selected_column_selector_option" value="all_but_by_index_number"/>
-            <param name="col1" value="2"/>
-            <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header2" value="True"/>
-            <param name="col2" value="2"/>
-            <output name="outfile" file="regression_metrics_result05"/>
+            <param name="selected_metric" value="median_absolute_error" />
+            <param name="infile1" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header1" value="True" />
+            <param name="selected_column_selector_option" value="all_but_by_index_number" />
+            <param name="col1" value="2" />
+            <param name="infile2" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header2" value="True" />
+            <param name="col2" value="2" />
+            <output name="outfile" file="regression_metrics_result05" />
         </test>
         <test>
-            <param name="selected_metric" value="r2_score"/>
-            <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header1" value="True"/>
-            <param name="col1" value="1"/>
-            <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/>
-            <param name="header2" value="True"/>
-            <param name="selected_column_selector_option2" value="all_but_by_index_number"/>
-            <param name="col2" value="1"/>
-            <output name="outfile" file="regression_metrics_result06"/>
+            <param name="selected_metric" value="r2_score" />
+            <param name="infile1" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header1" value="True" />
+            <param name="col1" value="1" />
+            <param name="infile2" value="regression_test_y.tabular" ftype="tabular" />
+            <param name="header2" value="True" />
+            <param name="selected_column_selector_option2" value="all_but_by_index_number" />
+            <param name="col2" value="1" />
+            <output name="outfile" file="regression_metrics_result06" />
         </test>
     </tests>
     <help>
@@ -196,5 +196,5 @@
 .. _`Scikit-learn classification metrics`: http://scikit-learn.org/stable/modules/model_evaluation.html#classification-metrics
         ]]>
     </help>
-    <expand macro="sklearn_citation"/>
+    <expand macro="sklearn_citation" />
 </tool>