Mercurial > repos > bgruening > sklearn_svm_classifier
annotate main_macros.xml @ 4:41d0edb7d1fc draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
author | bgruening |
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date | Thu, 23 Aug 2018 16:14:13 -0400 |
parents | 297541cc26d0 |
children | 1c5989b930e3 |
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7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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1 <macros> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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2 <token name="@VERSION@">0.9</token> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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3 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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4 <xml name="python_requirements"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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5 <requirements> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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6 <requirement type="package" version="2.7">python</requirement> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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7 <requirement type="package" version="0.19.1">scikit-learn</requirement> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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8 <requirement type="package" version="0.22.0">pandas</requirement> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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9 <requirement type="package" version="0.72.1">xgboost</requirement> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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10 <requirement type="package" version="0.9.12">asteval</requirement> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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11 <yield /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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12 </requirements> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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13 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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14 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
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15 <xml name="macro_stdio"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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16 <stdio> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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17 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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18 </stdio> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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19 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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20 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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21 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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22 <!--Generic interface--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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23 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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24 <xml name="sl_Conditional" token_train="tabular" token_data="tabular" token_model="txt"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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25 <conditional name="selected_tasks"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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26 <param name="selected_task" type="select" label="Select a Classification Task"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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27 <option value="train" selected="true">Train a model</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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28 <option value="load">Load a model and predict</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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29 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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30 <when value="load"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
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31 <param name="infile_model" type="data" format="@MODEL@" label="Models" help="Select a model file."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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32 <param name="infile_data" type="data" format="@DATA@" label="Data (tabular)" help="Select the dataset you want to classify."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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33 <param name="header" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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34 <conditional name="prediction_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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35 <param name="prediction_option" type="select" label="Select the type of prediction"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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changeset
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36 <option value="predict">Predict class labels</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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37 <option value="advanced">Include advanced options</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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38 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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39 <when value="predict"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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40 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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41 <when value="advanced"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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42 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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43 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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44 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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45 <when value="train"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
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46 <conditional name="selected_algorithms"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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47 <yield /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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48 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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49 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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50 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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51 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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52 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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53 <xml name="advanced_section"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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54 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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55 <yield /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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56 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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57 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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58 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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59 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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60 <!--Generalized Linear Models--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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61 <xml name="loss" token_help=" " token_select="false"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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62 <param argument="loss" type="select" label="Loss function" help="@HELP@"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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63 <option value="squared_loss" selected="@SELECT@">squared loss</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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64 <option value="huber">huber</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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65 <option value="epsilon_insensitive">epsilon insensitive</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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66 <option value="squared_epsilon_insensitive">squared epsilon insensitive</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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67 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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68 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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69 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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70 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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71 <xml name="penalty" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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72 <param argument="penalty" type="select" label="Penalty (regularization term)" help="@HELP@"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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73 <option value="l2" selected="true">l2</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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74 <option value="l1">l1</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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75 <option value="elasticnet">elastic net</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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76 <option value="none">none</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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77 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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78 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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79 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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80 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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81 <xml name="l1_ratio" token_default_value="0.15" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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82 <param argument="l1_ratio" type="float" value="@DEFAULT_VALUE@" label="Elastic Net mixing parameter" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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83 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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84 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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85 <xml name="epsilon" token_default_value="0.1" token_help="Used if loss is ‘huber’, ‘epsilon_insensitive’, or ‘squared_epsilon_insensitive’. "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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86 <param argument="epsilon" type="float" value="@DEFAULT_VALUE@" label="Epsilon (epsilon-sensitive loss functions only)" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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87 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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88 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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89 <xml name="learning_rate_s" token_help=" " token_selected1="false" token_selected2="false"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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90 <param argument="learning_rate" type="select" optional="true" label="Learning rate schedule" help="@HELP@"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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91 <option value="optimal" selected="@SELECTED1@">optimal</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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92 <option value="constant">constant</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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93 <option value="invscaling" selected="@SELECTED2@">inverse scaling</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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94 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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95 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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96 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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97 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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98 <xml name="eta0" token_default_value="0.0" token_help="Used with ‘constant’ or ‘invscaling’ schedules. "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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99 <param argument="eta0" type="float" value="@DEFAULT_VALUE@" label="Initial learning rate" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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100 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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101 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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102 <xml name="power_t" token_default_value="0.5" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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103 <param argument="power_t" type="float" value="@DEFAULT_VALUE@" label="Exponent for inverse scaling learning rate" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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104 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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105 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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106 <xml name="normalize" token_checked="false" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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107 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Normalize samples before training" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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108 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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109 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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110 <xml name="copy_X" token_checked="true" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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111 <param argument="copy_X" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use a copy of samples" help="If false, samples would be overwritten. "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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112 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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113 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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114 <xml name="ridge_params"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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115 <expand macro="normalize"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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116 <expand macro="alpha" default_value="1.0"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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117 <expand macro="fit_intercept"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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118 <expand macro="max_iter" default_value=""/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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119 <expand macro="tol" default_value="0.001" help_text="Precision of the solution. "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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120 <!--class_weight--> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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121 <expand macro="copy_X"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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122 <param argument="solver" type="select" value="" label="Solver to use in the computational routines" help=" "> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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123 <option value="auto" selected="true">auto</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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124 <option value="svd">svd</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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125 <option value="cholesky">cholesky</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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126 <option value="lsqr">lsqr</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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127 <option value="sparse_cg">sparse_cg</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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128 <option value="sag">sag</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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129 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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130 <expand macro="random_state"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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131 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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132 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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133 <!--Ensemble methods--> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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134 <xml name="n_estimators" token_default_value="10" token_help=" "> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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135 <param argument="n_estimators" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of trees in the forest" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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136 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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137 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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138 <xml name="max_depth" token_default_value="" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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139 <param argument="max_depth" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum depth of the tree" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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140 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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141 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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142 <xml name="min_samples_split" token_type="integer" token_default_value="2" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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143 <param argument="min_samples_split" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="Minimum number of samples required to split an internal node" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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144 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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145 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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146 <xml name="min_samples_leaf" token_type="integer" token_default_value="1" token_label="Minimum number of samples in newly created leaves" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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147 <param argument="min_samples_leaf" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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148 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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149 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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150 <xml name="min_weight_fraction_leaf" token_default_value="0.0" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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151 <param argument="min_weight_fraction_leaf" type="float" optional="true" value="@DEFAULT_VALUE@" label="Minimum weighted fraction of the input samples required to be at a leaf node" help="@HELP@"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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152 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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153 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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154 <xml name="max_leaf_nodes" token_default_value="" token_help=" "> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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155 <param argument="max_leaf_nodes" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum number of leaf nodes in best-first method" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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156 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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157 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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158 <xml name="min_impurity_decrease" token_default_value="0" token_help=" "> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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159 <param argument="min_impurity_decrease" type="float" value="@DEFAULT_VALUE@" optional="true" label="The threshold value of impurity for stopping node splitting" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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160 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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161 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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162 <xml name="bootstrap" token_checked="true" token_help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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163 <param argument="bootstrap" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="@CHECKED@" label="Use bootstrap samples for building trees." help="@HELP@"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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164 </xml> |
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165 |
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166 <xml name="criterion" token_help=" "> |
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167 <param argument="criterion" type="select" label="Function to measure the quality of a split" help=" "> |
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168 <option value="gini" selected="true">Gini impurity</option> |
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169 <option value="entropy">Information gain</option> |
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170 <yield/> |
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171 </param> |
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172 </xml> |
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173 |
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174 <xml name="criterion2" token_help=""> |
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175 <param argument="criterion" type="select" label="Function to measure the quality of a split" > |
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176 <option value="mse">mse - mean squared error</option> |
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177 <option value="mae">mae - mean absolute error</option> |
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178 <yield/> |
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179 </param> |
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180 </xml> |
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181 |
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182 <xml name="oob_score" token_checked="false" token_help=" "> |
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183 <param argument="oob_score" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use out-of-bag samples to estimate the generalization error" help="@HELP@"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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184 </xml> |
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185 |
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186 <xml name="max_features"> |
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187 <conditional name="select_max_features"> |
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188 <param argument="max_features" type="select" label="max_features"> |
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189 <option value="auto" selected="true">auto - max_features=n_features</option> |
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190 <option value="sqrt">sqrt - max_features=sqrt(n_features)</option> |
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191 <option value="log2">log2 - max_features=log2(n_features)</option> |
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192 <option value="number_input">I want to type the number in or input None type</option> |
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193 </param> |
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194 <when value="auto"> |
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195 </when> |
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196 <when value="sqrt"> |
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197 </when> |
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198 <when value="log2"> |
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199 </when> |
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200 <when value="number_input"> |
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201 <param name="num_max_features" type="float" value="" optional="true" label="Input max_features number:" help="If int, consider the number of features at each split; If float, then max_features is a percentage and int(max_features * n_features) features are considered at each split."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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202 </when> |
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203 </conditional> |
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204 </xml> |
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205 |
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206 <xml name="verbose" token_default_value="0" token_help="If 1 then it prints progress and performance once in a while. If greater than 1 then it prints progress and performance for every tree."> |
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207 <param argument="verbose" type="integer" value="@DEFAULT_VALUE@" optional="true" label="Enable verbose output" help="@HELP@"/> |
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208 </xml> |
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209 |
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210 <xml name="learning_rate" token_default_value="1.0" token_help=" "> |
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211 <param argument="learning_rate" type="float" optional="true" value="@DEFAULT_VALUE@" label="Learning rate" help="@HELP@"/> |
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212 </xml> |
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213 |
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214 <xml name="subsample" token_help=" "> |
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215 <param argument="subsample" type="float" value="1.0" optional="true" label="The fraction of samples to be used for fitting the individual base learners" help="@HELP@"/> |
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216 </xml> |
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217 |
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218 <xml name="presort"> |
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219 <param argument="presort" type="select" label="Whether to presort the data to speed up the finding of best splits in fitting" > |
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220 <option value="auto" selected="true">auto</option> |
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221 <option value="true">true</option> |
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222 <option value="false">false</option> |
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223 </param> |
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224 </xml> |
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225 |
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226 <!--Parameters--> |
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227 <xml name="tol" token_default_value="0.0" token_help_text="Early stopping heuristics based on the relative center changes. Set to default (0.0) to disable this convergence detection."> |
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228 <param argument="tol" type="float" optional="true" value="@DEFAULT_VALUE@" label="Tolerance" help="@HELP_TEXT@"/> |
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229 </xml> |
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230 |
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231 <xml name="n_clusters" token_default_value="8"> |
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232 <param argument="n_clusters" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of clusters" help=" "/> |
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233 </xml> |
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234 |
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235 <xml name="fit_intercept" token_checked="true"> |
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236 <param argument="fit_intercept" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Estimate the intercept" help="If false, the data is assumed to be already centered."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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237 </xml> |
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238 |
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239 <xml name="n_iter" token_default_value="5" token_help_text="The number of passes over the training data (aka epochs). "> |
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240 <param argument="n_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of iterations" help="@HELP_TEXT@"/> |
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241 </xml> |
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242 |
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243 <xml name="shuffle" token_checked="true" token_help_text=" " token_label="Shuffle data after each iteration"> |
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244 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="@LABEL@" help="@HELP_TEXT@"/> |
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245 </xml> |
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246 |
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247 <xml name="random_state" token_default_value="" token_help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data. A fixed seed allows reproducible results."> |
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248 <param argument="random_state" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Random seed number" help="@HELP_TEXT@"/> |
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249 </xml> |
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250 |
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251 <xml name="warm_start" token_checked="true" token_help_text="When set to True, reuse the solution of the previous call to fit as initialization,otherwise, just erase the previous solution."> |
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252 <param argument="warm_start" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Perform warm start" help="@HELP_TEXT@"/> |
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253 </xml> |
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254 |
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255 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term."> |
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256 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@"/> |
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257 </xml> |
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258 |
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259 <!--xml name="class_weight" token_default_value="" token_help_text=""> |
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260 <param argument="class_weight" type="" optional="true" value="@DEFAULT_VALUE@" label="" help="@HELP_TEXT@"/> |
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261 </xml--> |
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262 |
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263 <xml name="alpha" token_default_value="0.0001" token_help_text="Constant that multiplies the regularization term if regularization is used. "> |
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264 <param argument="alpha" type="float" optional="true" value="@DEFAULT_VALUE@" label="Regularization coefficient" help="@HELP_TEXT@"/> |
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265 </xml> |
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266 |
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267 <xml name="n_samples" token_default_value="100" token_help_text="The total number of points equally divided among clusters."> |
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268 <param argument="n_samples" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of samples" help="@HELP_TEXT@"/> |
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269 </xml> |
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270 |
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271 <xml name="n_features" token_default_value="2" token_help_text="Number of different numerical properties produced for each sample."> |
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272 <param argument="n_features" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of features" help="@HELP_TEXT@"/> |
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273 </xml> |
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274 |
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275 <xml name="noise" token_default_value="0.0" token_help_text="Floating point number. "> |
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276 <param argument="noise" type="float" optional="true" value="@DEFAULT_VALUE@" label="Standard deviation of the Gaussian noise added to the data" help="@HELP_TEXT@"/> |
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277 </xml> |
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278 |
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279 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term. "> |
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280 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@"/> |
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281 </xml> |
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282 |
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283 <xml name="max_iter" token_default_value="300" token_label="Maximum number of iterations per single run" token_help_text=" "> |
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284 <param argument="max_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
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285 </xml> |
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286 |
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287 <xml name="n_init" token_default_value="10" > |
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288 <param argument="n_init" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of runs with different centroid seeds" help=" "/> |
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289 </xml> |
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290 |
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291 <xml name="init"> |
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292 <param argument="init" type="select" label="Centroid initialization method" help="''k-means++'' selects initial cluster centers that speed up convergence. ''random'' chooses k observations (rows) at random from data as initial centroids."> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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293 <option value="k-means++">k-means++</option> |
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294 <option value="random">random</option> |
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295 </param> |
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296 </xml> |
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297 |
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298 <xml name="gamma" token_default_value="1.0" token_label="Scaling parameter" token_help_text=" "> |
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299 <param argument="gamma" type="float" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
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300 </xml> |
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301 |
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302 <xml name="degree" token_default_value="3" token_label="Degree of the polynomial" token_help_text=" "> |
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303 <param argument="degree" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
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304 </xml> |
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305 |
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306 <xml name="coef0" token_default_value="1" token_label="Zero coefficient" token_help_text=" "> |
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307 <param argument="coef0" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
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308 </xml> |
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309 |
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310 <xml name="pos_label" token_default_value=""> |
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311 <param argument="pos_label" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Label of the positive class" help=" "/> |
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312 </xml> |
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313 |
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314 <xml name="average"> |
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315 <param argument="average" type="select" optional="true" label="Averaging type" help=" "> |
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316 <option value="micro">Calculate metrics globally by counting the total true positives, false negatives and false positives. (micro)</option> |
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317 <option value="samples">Calculate metrics for each instance, and find their average. Only meaningful for multilabel. (samples)</option> |
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318 <option value="macro">Calculate metrics for each label, and find their unweighted mean. This does not take label imbalance into account. (macro)</option> |
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319 <option value="weighted">Calculate metrics for each label, and find their average, weighted by support (the number of true instances for each label). This alters ‘macro’ to account for label imbalance; it can result in an F-score that is not between precision and recall. (weighted)</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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320 <option value="None">None</option> |
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321 <yield/> |
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322 </param> |
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323 </xml> |
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324 |
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325 <xml name="beta"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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326 <param argument="beta" type="float" value="1.0" label="The strength of recall versus precision in the F-score" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
327 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
328 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
329 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
330 <!--Data interface--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
331 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
332 <xml name="samples_tabular" token_multiple1="false" token_multiple2="false"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
333 <param name="infile1" type="data" format="tabular" label="Training samples dataset:"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
334 <param name="header1" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
335 <conditional name="column_selector_options_1"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
336 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
337 </conditional> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
338 <param name="infile2" type="data" format="tabular" label="Dataset containing class labels or target values:"/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
339 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
340 <conditional name="column_selector_options_2"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
341 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE2@" infile="infile2"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
342 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
343 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
344 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
345 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
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346 <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
347 <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
348 <option value="by_index_number" selected="true">Select columns by column index number(s)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
349 <option value="by_header_name">Select columns by column header name(s)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
350 <option value="all_but_by_index_number">All columns but by column index number(s)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
351 <option value="all_but_by_header_name">All columns but by column header name(s)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
352 <option value="all_columns">All columns</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
353 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
354 <when value="by_index_number"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
355 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
356 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
357 <when value="by_header_name"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
358 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
359 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
360 <when value="all_but_by_index_number"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
361 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
362 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
363 <when value="all_but_by_header_name"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
364 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
365 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
366 <when value="all_columns"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
367 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
368 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
369 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
370 <xml name="clf_inputs_extended" token_label1=" " token_label2=" " token_multiple="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
371 <conditional name="true_columns"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
372 <param name="selected_input1" type="select" label="Select the input type of true labels dataset:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
373 <option value="tabular" selected="true">Tabular</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
374 <option value="sparse">Sparse</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
375 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
376 <when value="tabular"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
377 <param name="infile1" type="data" label="@LABEL1@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
378 <param name="col1" type="data_column" data_ref="infile1" label="Select the target column:"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
379 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
380 <when value="sparse"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
381 <param name="infile1" type="data" format="txt" label="@LABEL1@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
382 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
383 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
384 <conditional name="predicted_columns"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
385 <param name="selected_input2" type="select" label="Select the input type of predicted labels dataset:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
386 <option value="tabular" selected="true">Tabular</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
387 <option value="sparse">Sparse</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
388 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
389 <when value="tabular"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
390 <param name="infile2" type="data" label="@LABEL2@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
391 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
392 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
393 <when value="sparse"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
394 <param name="infile2" type="data" format="txt" label="@LABEL1@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
395 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
396 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
397 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
398 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
399 <xml name="clf_inputs" token_label1="Dataset containing true labels (tabular):" token_label2="Dataset containing predicted values (tabular):" token_multiple1="False" token_multiple="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
400 <param name="infile1" type="data" format="tabular" label="@LABEL1@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
401 <param name="header1" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
402 <conditional name="column_selector_options_1"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
403 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
404 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
405 <param name="infile2" type="data" format="tabular" label="@LABEL2@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
406 <param name="header2" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
407 <conditional name="column_selector_options_2"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
408 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE@" infile="infile2"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
409 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
410 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
411 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
412 <xml name="multiple_input" token_name="input_files" token_max_num="10" token_format="txt" token_label="Sparse matrix file (.mtx, .txt)" token_help_text="Specify a sparse matrix file in .txt format."> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
413 <repeat name="@NAME@" min="1" max="@MAX_NUM@" title="Select input file(s):"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
414 <param name="input" type="data" format="@FORMAT@" label="@LABEL@" help="@HELP_TEXT@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
415 </repeat> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
416 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
417 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
418 <xml name="sparse_target" token_label1="Select a sparse matrix:" token_label2="Select the tabular containing true labels:" token_multiple="False" token_format1="txt" token_format2="tabular" token_help1="" token_help2=""> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
419 <param name="infile1" type="data" format="@FORMAT1@" label="@LABEL1@" help="@HELP1@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
420 <param name="infile2" type="data" format="@FORMAT2@" label="@LABEL2@" help="@HELP2@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
421 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
422 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
423 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
424 <xml name="sl_mixed_input"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
425 <conditional name="input_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
426 <param name="selected_input" type="select" label="Select input type:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
427 <option value="tabular" selected="true">tabular data</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
428 <option value="sparse">sparse matrix</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
429 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
430 <when value="tabular"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
431 <expand macro="samples_tabular" multiple1="true"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
432 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
433 <when value="sparse"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
434 <expand macro="sparse_target"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
435 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
436 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
437 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
438 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
439 <!--Advanced options--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
440 <xml name="nn_advanced_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
441 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
442 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
443 <param argument="weights" type="select" label="Weight function" help="Used in prediction."> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
444 <option value="uniform" selected="true">Uniform weights. All points in each neighborhood are weighted equally. (Uniform)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
445 <option value="distance">Weight points by the inverse of their distance. (Distance)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
446 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
447 <param argument="algorithm" type="select" label="Neighbor selection algorithm" help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
448 <option value="auto" selected="true">Auto</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
449 <option value="ball_tree">BallTree</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
450 <option value="kd_tree">KDTree</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
451 <option value="brute">Brute-force</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
452 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
453 <param argument="leaf_size" type="integer" value="30" label="Leaf size" help="Used with BallTree and KDTree. Affects the time and memory usage of the constructed tree."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
454 <!--param name="metric"--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
455 <!--param name="p"--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
456 <!--param name="metric_params"--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
457 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
458 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
459 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
460 <xml name="svc_advanced_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
461 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
462 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
463 <param argument="kernel" type="select" optional="true" label="Kernel type" help="Kernel type to be used in the algorithm. If none is given, ‘rbf’ will be used."> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
464 <option value="rbf" selected="true">rbf</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
465 <option value="linear">linear</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
466 <option value="poly">poly</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
467 <option value="sigmoid">sigmoid</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
468 <option value="precomputed">precomputed</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
469 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
470 <param argument="degree" type="integer" optional="true" value="3" label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
471 <!--TODO: param argument="gamma" float, optional (default=’auto’) --> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
472 <param argument="coef0" type="float" optional="true" value="0.0" label="Zero coefficient (polynomial and sigmoid kernels only)" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
473 help="Independent term in kernel function. dafault: 0.0 "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
474 <param argument="shrinking" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
475 label="Use the shrinking heuristic" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
476 <param argument="probability" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
477 label="Enable probability estimates. " help="This must be enabled prior to calling fit, and will slow down that method."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
478 <!-- param argument="cache_size"--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
479 <!--expand macro="class_weight"/--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
480 <expand macro="tol" default_value="0.001" help_text="Tolerance for stopping criterion. "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
481 <expand macro="max_iter" default_value="-1" label="Solver maximum number of iterations" help_text="Hard limit on iterations within solver, or -1 for no limit."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
482 <!--param argument="decision_function_shape"--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
483 <expand macro="random_state" help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data for probability estimation. A fixed seed allows reproducible results."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
484 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
485 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
486 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
487 <xml name="spectral_clustering_advanced_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
488 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
489 <expand macro="n_clusters"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
490 <param argument="eigen_solver" type="select" value="" label="Eigen solver" help="The eigenvalue decomposition strategy to use."> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
491 <option value="arpack" selected="true">arpack</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
492 <option value="lobpcg">lobpcg</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
493 <option value="amg">amg</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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494 <!--None--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
495 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
496 <expand macro="random_state"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
497 <expand macro="n_init"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
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498 <param argument="gamma" type="float" optional="true" value="1.0" label="Kernel scaling factor" help="Scaling factor of RBF, polynomial, exponential chi^2 and sigmoid affinity kernel. Ignored for affinity=''nearest_neighbors''."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
499 <param argument="affinity" type="select" label="Affinity" help="Affinity kernel to use. "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
500 <option value="rbf" selected="true">RBF</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
501 <option value="precomputed">precomputed</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
502 <option value="nearest_neighbors">Nearset neighbors</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
503 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
504 <param argument="n_neighbors" type="integer" optional="true" value="10" label="Number of neighbors" help="Number of neighbors to use when constructing the affinity matrix using the nearest neighbors method. Ignored for affinity=''rbf''"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
505 <!--param argument="eigen_tol"--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
506 <param argument="assign_labels" type="select" label="Assign labels" help="The strategy to use to assign labels in the embedding space."> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
507 <option value="kmeans" selected="true">kmeans</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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508 <option value="discretize">discretize</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
509 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
510 <param argument="degree" type="integer" optional="true" value="3" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
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511 label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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512 <param argument="coef0" type="integer" optional="true" value="1" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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513 label="Zero coefficient (polynomial and sigmoid kernels only)" help="Ignored by other kernels. dafault : 1 "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
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|
514 <!--param argument="kernel_params"--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
515 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
516 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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|
517 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
518 <xml name="minibatch_kmeans_advanced_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
519 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
520 <expand macro="n_clusters"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
521 <expand macro="init"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
522 <expand macro="n_init" default_value="3"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
523 <expand macro="max_iter" default_value="100"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
524 <expand macro="tol" help_text="Early stopping heuristics based on normalized center change. To disable set to 0.0 ."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
525 <expand macro="random_state"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
526 <param argument="batch_size" type="integer" optional="true" value="100" label="Batch size" help="Size of the mini batches."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
527 <!--param argument="compute_labels"--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
528 <param argument="max_no_improvement" type="integer" optional="true" value="10" label="Maximum number of improvement attempts" help=" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
529 Convergence detection based on inertia (the consecutive number of mini batches that doe not yield an improvement on the smoothed inertia). |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
530 To disable, set max_no_improvement to None. "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
531 <param argument="init_size" type="integer" optional="true" value="" label="Number of random initialization samples" help="Number of samples to randomly sample for speeding up the initialization . ( default: 3 * batch_size )"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
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532 <param argument="reassignment_ratio" type="float" optional="true" value="0.01" label="Re-assignment ratio" help="Controls the fraction of the maximum number of counts for a center to be reassigned. Higher values yield better clustering results."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
533 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
534 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
535 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
536 <xml name="kmeans_advanced_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
537 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
538 <expand macro="n_clusters"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
539 <expand macro="init"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
540 <expand macro="n_init"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
541 <expand macro="max_iter"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
542 <expand macro="tol" default_value="0.0001" help_text="Relative tolerance with regards to inertia to declare convergence."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
543 <!--param argument="precompute_distances"/--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
544 <expand macro="random_state"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
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|
545 <param argument="copy_x" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Use a copy of data for precomputing distances" help="Mofifying the original data introduces small numerical differences caused by subtracting and then adding the data mean."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
546 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
547 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
548 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
549 <xml name="birch_advanced_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
550 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
551 <param argument="threshold" type="float" optional="true" value="0.5" label="Subcluster radius threshold" help="The radius of the subcluster obtained by merging a new sample; the closest subcluster should be less than the threshold to avoid a new subcluster."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
552 <param argument="branching_factor" type="integer" optional="true" value="50" label="Maximum number of subclusters per branch" help="Maximum number of CF subclusters in each node."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
553 <expand macro="n_clusters" default_value="3"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
554 <!--param argument="compute_labels"/--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
555 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
556 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
557 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
558 <xml name="dbscan_advanced_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
559 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
560 <param argument="eps" type="float" optional="true" value="0.5" label="Maximum neighborhood distance" help="The maximum distance between two samples for them to be considered as in the same neighborhood."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
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changeset
|
561 <param argument="min_samples" type="integer" optional="true" value="5" label="Minimal core point density" help="The number of samples (or total weight) in a neighborhood for a point (including the point itself) to be considered as a core point."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
562 <param argument="metric" type="text" optional="true" value="euclidean" label="Metric" help="The metric to use when calculating distance between instances in a feature array."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
563 <param argument="algorithm" type="select" label="Pointwise distance computation algorithm" help="The algorithm to be used by the NearestNeighbors module to compute pointwise distances and find nearest neighbors."> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
564 <option value="auto" selected="true">auto</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
565 <option value="ball_tree">ball_tree</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
566 <option value="kd_tree">kd_tree</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
567 <option value="brute">brute</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
568 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
569 <param argument="leaf_size" type="integer" optional="true" value="30" label="Leaf size" help="Leaf size passed to BallTree or cKDTree. Memory and time efficieny factor in tree constrution and querying."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
570 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
571 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
572 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
573 <xml name="clustering_algorithms_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
574 <conditional name="algorithm_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
575 <param name="selected_algorithm" type="select" label="Clustering Algorithm"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
576 <option value="KMeans" selected="true">KMeans</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
577 <option value="SpectralClustering">Spectral Clustering</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
578 <option value="MiniBatchKMeans">Mini Batch KMeans</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
579 <option value="DBSCAN">DBSCAN</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
580 <option value="Birch">Birch</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
581 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
582 <when value="KMeans"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
583 <expand macro="kmeans_advanced_options"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
584 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
585 <when value="DBSCAN"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
586 <expand macro="dbscan_advanced_options"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
587 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
588 <when value="Birch"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
589 <expand macro="birch_advanced_options"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
590 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
591 <when value="SpectralClustering"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
592 <expand macro="spectral_clustering_advanced_options"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
593 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
594 <when value="MiniBatchKMeans"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
595 <expand macro="minibatch_kmeans_advanced_options"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
596 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
597 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
598 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
599 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
600 <xml name="distance_metrics"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
601 <param argument="metric" type="select" label="Distance metric" help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
602 <option value="euclidean" selected="true">euclidean</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
603 <option value="cityblock">cityblock</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
604 <option value="cosine">cosine</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
605 <option value="l1">l1</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
606 <option value="l2">l2</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
607 <option value="manhattan">manhattan</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
608 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
609 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
610 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
611 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
612 <xml name="distance_nonsparse_metrics"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
613 <option value="braycurtis">braycurtis</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
614 <option value="canberra">canberra</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
615 <option value="chebyshev">chebyshev</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
616 <option value="correlation">correlation</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
617 <option value="dice">dice</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
618 <option value="hamming">hamming</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
619 <option value="jaccard">jaccard</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
620 <option value="kulsinski">kulsinski</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
621 <option value="mahalanobis">mahalanobis</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
622 <option value="matching">matching</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
623 <option value="minkowski">minkowski</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
624 <option value="rogerstanimoto">rogerstanimoto</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
625 <option value="russellrao">russellrao</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
626 <option value="seuclidean">seuclidean</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
627 <option value="sokalmichener">sokalmichener</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
628 <option value="sokalsneath">sokalsneath</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
629 <option value="sqeuclidean">sqeuclidean</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
630 <option value="yule">yule</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
631 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
632 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
633 <xml name="pairwise_kernel_metrics"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
634 <param argument="metric" type="select" label="Pirwise Kernel metric" help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
635 <option value="rbf" selected="true">rbf</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
636 <option value="sigmoid">sigmoid</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
637 <option value="polynomial">polynomial</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
638 <option value="linear" selected="true">linear</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
639 <option value="chi2">chi2</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
640 <option value="additive_chi2">additive_chi2</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
641 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
642 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
643 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
644 <xml name="sparse_pairwise_metric_functions"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
645 <param name="selected_metric_function" type="select" label="Select the pairwise metric you want to compute:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
646 <option value="euclidean_distances" selected="true">Euclidean distance matrix</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
647 <option value="pairwise_distances">Distance matrix</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
648 <option value="pairwise_distances_argmin">Minimum distances between one point and a set of points</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
649 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
650 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
651 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
652 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
653 <xml name="pairwise_metric_functions"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
654 <option value="additive_chi2_kernel" >Additive chi-squared kernel</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
655 <option value="chi2_kernel">Exponential chi-squared kernel</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
656 <option value="linear_kernel">Linear kernel</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
657 <option value="manhattan_distances">L1 distances</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
658 <option value="pairwise_kernels">Kernel</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
659 <option value="polynomial_kernel">Polynomial kernel</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
660 <option value="rbf_kernel">Gaussian (rbf) kernel</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
661 <option value="laplacian_kernel">Laplacian kernel</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
662 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
663 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
664 <xml name="sparse_pairwise_condition"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
665 <when value="pairwise_distances"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
666 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
667 <expand macro="distance_metrics"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
668 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
669 </expand> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
670 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
671 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
672 <when value="euclidean_distances"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
673 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
674 <param argument="squared" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
675 label="Return squared Euclidean distances" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
676 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
677 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
678 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
679 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
680 <xml name="argmin_distance_condition"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
681 <when value="pairwise_distances_argmin"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
682 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
683 <param argument="axis" type="integer" optional="true" value="1" label="Axis" help="Axis along which the argmin and distances are to be computed."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
684 <expand macro="distance_metrics"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
685 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
686 </expand> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
687 <param argument="batch_size" type="integer" optional="true" value="500" label="Batch size" help="Number of rows to be processed in each batch run."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
688 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
689 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
690 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
691 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
692 <xml name="sparse_preprocessors"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
693 <param name="selected_pre_processor" type="select" label="Select a preprocessor:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
694 <option value="StandardScaler" selected="true">Standard Scaler (Standardizes features by removing the mean and scaling to unit variance)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
695 <option value="Binarizer">Binarizer (Binarizes data)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
696 <option value="Imputer">Imputer (Completes missing values)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
697 <option value="MaxAbsScaler">Max Abs Scaler (Scales features by their maximum absolute value)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
698 <option value="Normalizer">Normalizer (Normalizes samples individually to unit norm)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
699 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
700 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
701 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
702 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
703 <xml name="sparse_preprocessors_ext"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
704 <expand macro="sparse_preprocessors"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
705 <option value="KernelCenterer">Kernel Centerer (Centers a kernel matrix)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
706 <option value="MinMaxScaler">Minmax Scaler (Scales features to a range)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
707 <option value="PolynomialFeatures">Polynomial Features (Generates polynomial and interaction features)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
708 <option value="RobustScaler">Robust Scaler (Scales features using outlier-invariance statistics)</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
709 </expand> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
710 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
711 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
712 <xml name="sparse_preprocessor_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
713 <when value="Binarizer"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
714 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
715 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
716 label="Use a copy of data for precomputing binarization" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
717 <param argument="threshold" type="float" optional="true" value="0.0" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
718 label="Threshold" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
719 help="Feature values below or equal to this are replaced by 0, above it by 1. Threshold may not be less than 0 for operations on sparse matrices. "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
720 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
721 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
722 <when value="Imputer"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
723 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
724 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
725 label="Use a copy of data for precomputing imputation" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
726 <param argument="strategy" type="select" optional="true" label="Imputation strategy" help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
727 <option value="mean" selected="true">Replace missing values using the mean along the axis</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
728 <option value="median">Replace missing values using the median along the axis</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
729 <option value="most_frequent">Replace missing using the most frequent value along the axis</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
730 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
731 <param argument="missing_values" type="text" optional="true" value="NaN" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
732 label="Placeholder for missing values" help="For missing values encoded as numpy.nan, use the string value “NaN”"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
733 <param argument="axis" type="boolean" optional="true" truevalue="1" falsevalue="0" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
734 label="Impute along axis = 1" help="If fasle, axis = 0 is selected for imputation. "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
735 <!--param argument="axis" type="select" optional="true" label="The axis along which to impute" help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
736 <option value="0" selected="true">Impute along columns</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
737 <option value="1">Impute along rows</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
738 </param--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
739 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
740 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
741 <when value="StandardScaler"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
742 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
743 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
744 label="Use a copy of data for performing inplace scaling" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
745 <param argument="with_mean" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
746 label="Center the data before scaling" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
747 <param argument="with_std" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
748 label="Scale the data to unit variance (or unit standard deviation)" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
749 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
750 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
751 <when value="MaxAbsScaler"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
752 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
753 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
754 label="Use a copy of data for precomputing scaling" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
755 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
756 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
757 <when value="Normalizer"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
758 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
759 <param argument="norm" type="select" optional="true" label="The norm to use to normalize non zero samples" help=" "> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
760 <option value="l1" selected="true">l1</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
761 <option value="l2">l2</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
762 <option value="max">max</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
763 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
764 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
765 label="Use a copy of data for precomputing row normalization" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
766 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
767 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
768 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
769 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
770 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
771 <xml name="sparse_preprocessor_options_ext"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
772 <expand macro="sparse_preprocessor_options"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
773 <when value="KernelCenterer"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
774 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
775 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
776 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
777 <when value="MinMaxScaler"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
778 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
779 <!--feature_range--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
780 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
781 label="Use a copy of data for precomputing normalization" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
782 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
783 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
784 <when value="PolynomialFeatures"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
785 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
786 <param argument="degree" type="integer" optional="true" value="2" label="The degree of the polynomial features " help=""/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
787 <param argument="interaction_only" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false" label="Produce interaction features only" help="(Features that are products of at most degree distinct input features) "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
788 <param argument="include_bias" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Include a bias column" help="Feature in which all polynomial powers are zero "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
789 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
790 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
791 <when value="RobustScaler"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
792 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
793 <!--=True, =True, copy=True--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
794 <param argument="with_centering" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
795 label="Center the data before scaling" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
796 <param argument="with_scaling" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
797 label="Scale the data to interquartile range" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
798 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
799 label="Use a copy of data for inplace scaling" help=" "/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
800 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
801 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
802 </expand> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
803 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
804 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
805 <xml name="fs_selectfrommodel_prefitted"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
806 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" > |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
807 <option value="new" selected="true">Yes</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
808 <option value="prefitted">No. Load a prefitted estimator</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
809 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
810 <when value="new"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
811 <expand macro="estimator_selector_all"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
812 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
813 <when value="prefitted"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
814 <param name="fitted_estimator" type="data" format='zip' label="Load a prefitted estimator" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
815 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
816 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
817 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
818 <xml name="fs_selectfrommodel_no_prefitted"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
819 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" > |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
820 <option value="new" selected="true">Yes</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
821 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
822 <when value="new"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
823 <expand macro="estimator_selector_all"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
824 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
825 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
826 |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
827 <xml name="cv"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
828 <param argument="cv" type="text" value="" optional="true" label="cv" help="Optional. Integer or evalable splitter object, e.g., StratifiedKFold(n_splits=3, shuffle=True, random_state=10). Leave blank for default." > |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
829 <sanitizer> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
830 <valid initial="default"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
831 <add value="'"/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
832 </valid> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
833 </sanitizer> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
834 </param> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
835 </xml> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
836 |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
837 <xml name="feature_selection_all"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
838 <conditional name="fs_algorithm_selector"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
839 <param name="selected_algorithm" type="select" label="Select a feature selection algorithm"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
840 <option value="SelectKBest" selected="true">SelectKBest - Select features according to the k highest scores</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
841 <option value="SelectFromModel">SelectFromModel - Meta-transformer for selecting features based on importance weights</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
842 <option value="GenericUnivariateSelect">GenericUnivariateSelect - Univariate feature selector with configurable strategy</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
843 <option value="SelectPercentile">SelectPercentile - Select features according to a percentile of the highest scores</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
844 <option value="SelectFpr">SelectFpr - Filter: Select the p-values below alpha based on a FPR test</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
845 <option value="SelectFdr">SelectFdr - Filter: Select the p-values for an estimated false discovery rate</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
846 <option value="SelectFwe">SelectFwe - Filter: Select the p-values corresponding to Family-wise error rate</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
847 <option value="RFE">RFE - Feature ranking with recursive feature elimination</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
848 <option value="RFECV">RFECV - Feature ranking with recursive feature elimination and cross-validated selection of the best number of features</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
849 <option value="VarianceThreshold">VarianceThreshold - Feature selector that removes all low-variance features</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
850 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
851 <when value="SelectFromModel"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
852 <conditional name="model_inputter"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
853 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
854 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
855 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
856 <param argument="threshold" type="text" value="" optional="true" label="threshold" help="The threshold value to use for feature selection. e.g. 'mean', 'median', '1.25*mean'." /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
857 <param argument="norm_order" type="integer" value="1" label="norm_order" help="Order of the norm used to filter the vectors of coefficients below threshold in the case where the coef_ attribute of the estimator is of dimension 2. " /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
858 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
859 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
860 <when value="GenericUnivariateSelect"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
861 <expand macro="feature_selection_score_function" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
862 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
863 <param argument="mode" type="select" label="Feature selection mode"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
864 <option value="percentile">percentile</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
865 <option value="k_best">k_best</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
866 <option value="fpr">fpr</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
867 <option value="fdr">fdr</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
868 <option value="fwe">fwe</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
869 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
870 <param argument="param" type="float" value="" optional="true" label="Parameter of the corresponding mode" help="float or int depending on the feature selection mode" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
871 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
872 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
873 <when value="SelectPercentile"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
874 <expand macro="feature_selection_score_function" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
875 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
876 <param argument="percentile" type="integer" value="10" optional="True" label="Percent of features to keep" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
877 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
878 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
879 <when value="SelectKBest"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
880 <expand macro="feature_selection_score_function" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
881 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
882 <param argument="k" type="integer" value="10" optional="True" label="Number of top features to select" help="No 'all' option is supported." /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
883 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
884 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
885 <when value="SelectFpr"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
886 <expand macro="feature_selection_score_function" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
887 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
888 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest p-value for features to be kept."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
889 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
890 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
891 <when value="SelectFdr"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
892 <expand macro="feature_selection_score_function" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
893 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
894 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
895 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
896 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
897 <when value="SelectFwe"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
898 <expand macro="feature_selection_score_function" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
899 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
900 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
901 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
902 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
903 <when value="RFE"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
904 <expand macro="estimator_selector_all"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
905 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
906 <param argument="n_features_to_select" type="integer" value="" optional="true" label="n_features_to_select" help="The number of features to select. If None, half of the features are selected." /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
907 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
908 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
909 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
910 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
911 <when value="RFECV"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
912 <expand macro="estimator_selector_all"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
913 <section name="options" title="Advanced Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
914 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
915 <expand macro="cv"/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
916 <expand macro="scoring_selection"/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
917 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
918 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
919 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
920 <when value="VarianceThreshold"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
921 <section name="options" title="Options" expanded="False"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
922 <param argument="threshold" type="float" value="" optional="True" label="Threshold" help="Features with a training-set variance lower than this threshold will be removed."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
923 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
924 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
925 <!--when value="chi2"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
926 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
927 <when value="f_classif"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
928 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
929 <when value="f_regression"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
930 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
931 <when value="mutual_info_classif"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
932 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
933 <when value="mutual_info_regression"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
934 </when--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
935 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
936 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
937 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
938 <xml name="feature_selection_score_function"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
939 <param argument="score_func" type="select" label="Select a score function"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
940 <option value="chi2">chi2 - Compute chi-squared stats between each non-negative feature and class</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
941 <option value="f_classif">f_classif - Compute the ANOVA F-value for the provided sample</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
942 <option value="f_regression">f_regression - Univariate linear regression tests</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
943 <option value="mutual_info_classif">mutual_info_classif - Estimate mutual information for a discrete target variable</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
944 <option value="mutual_info_regression">mutual_info_regression - Estimate mutual information for a continuous target variable</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
945 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
946 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
947 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
948 <xml name="feature_selection_output_mothods"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
949 <conditional name="output_method_selector"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
950 <param name="selected_method" type="select" label="Select an output method:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
951 <option value="fit_transform">fit_transform - Fit to data, then transform it</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
952 <option value="get_support">get_support - Get a mask, or integer index, of the features selected</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
953 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
954 <when value="fit_transform"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
955 <!--**fit_params--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
956 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
957 <when value="get_support"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
958 <param name="indices" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Indices" help="If True, the return value will be an array of integers, rather than a boolean mask."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
959 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
960 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
961 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
962 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
963 <xml name="model_validation_common_options"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
964 <expand macro="cv"/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
965 <expand macro="verbose"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
966 <yield/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
967 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
968 |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
969 <xml name="scoring_selection"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
970 <conditional name="scoring"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
971 <param name="primary_scoring" type="select" multiple="false" label="Select the primary metric (scoring):" help="Metric to refit the best estimator."> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
972 <option value="default" selected="true">default with estimator</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
973 <option value="accuracy">Classification -- 'accuracy'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
974 <option value="balanced_accuracy">Classification -- 'balanced_accuracy'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
975 <option value="average_precision">Classification -- 'average_precision'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
976 <option value="f1">Classification -- 'f1'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
977 <option value="f1_micro">Classification -- 'f1_micro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
978 <option value="f1_macro">Classification -- 'f1_macro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
979 <option value="f1_weighted">Classification -- 'f1_weighted'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
980 <option value="f1_samples">Classification -- 'f1_samples'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
981 <option value="neg_log_loss">Classification -- 'neg_log_loss'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
982 <option value="precision">Classification -- 'precision'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
983 <option value="precision_micro">Classification -- 'precision_micro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
984 <option value="precision_macro">Classification -- 'precision_macro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
985 <option value="precision_wighted">Classification -- 'precision_wighted'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
986 <option value="precision_samples">Classification -- 'precision_samples'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
987 <option value="recall">Classification -- 'recall'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
988 <option value="recall_micro">Classification -- 'recall_micro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
989 <option value="recall_macro">Classification -- 'recall_macro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
990 <option value="recall_wighted">Classification -- 'recall_wighted'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
991 <option value="recall_samples">Classification -- 'recall_samples'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
992 <option value="roc_auc">Classification -- 'roc_auc'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
993 <option value="explained_variance">Regression -- 'explained_variance'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
994 <option value="neg_mean_absolute_error">Regression -- 'neg_mean_absolute_error'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
995 <option value="neg_mean_squared_error">Regression -- 'neg_mean_squared_error'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
996 <option value="neg_mean_squared_log_error">Regression -- 'neg_mean_squared_log_error'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
997 <option value="neg_median_absolute_error">Regression -- 'neg_median_absolute_error'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
998 <option value="r2">Regression -- 'r2'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
999 </param> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1000 <when value="default"/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1001 <when value="accuracy"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1002 <when value="balanced_accuracy"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1003 <when value="average_precision"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1004 <when value="f1"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1005 <when value="f1_micro"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1006 <when value="f1_macro"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1007 <when value="f1_weighted"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1008 <when value="f1_samples"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1009 <when value="neg_log_loss"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1010 <when value="precision"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1011 <when value="precision_micro"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1012 <when value="precision_macro"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1013 <when value="precision_wighted"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1014 <when value="precision_samples"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1015 <when value="recall"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1016 <when value="recall_micro"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1017 <when value="recall_macro"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1018 <when value="recall_wighted"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1019 <when value="recall_samples"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1020 <when value="roc_auc"><expand macro="secondary_scoring_selection_classification"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1021 <when value="explained_variance"><expand macro="secondary_scoring_selection_regression"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1022 <when value="neg_mean_absolute_error"><expand macro="secondary_scoring_selection_regression"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1023 <when value="neg_mean_squared_error"><expand macro="secondary_scoring_selection_regression"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1024 <when value="neg_mean_squared_log_error"><expand macro="secondary_scoring_selection_regression"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1025 <when value="neg_median_absolute_error"><expand macro="secondary_scoring_selection_regression"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1026 <when value="r2"><expand macro="secondary_scoring_selection_regression"/></when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1027 </conditional> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1028 </xml> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1029 |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1030 <xml name="secondary_scoring_selection_classification"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1031 <param name="secondary_scoring" type="select" multiple="true" label="Additional scoring used in multi-metric mode:" help="If the same metric with the primary is chosen, the metric will be ignored."> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1032 <option value="accuracy">Classification -- 'accuracy'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1033 <option value="balanced_accuracy">Classification -- 'balanced_accuracy'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1034 <option value="average_precision">Classification -- 'average_precision'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1035 <option value="f1">Classification -- 'f1'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1036 <option value="f1_micro">Classification -- 'f1_micro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1037 <option value="f1_macro">Classification -- 'f1_macro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1038 <option value="f1_weighted">Classification -- 'f1_weighted'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1039 <option value="f1_samples">Classification -- 'f1_samples'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1040 <option value="neg_log_loss">Classification -- 'neg_log_loss'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1041 <option value="precision">Classification -- 'precision'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1042 <option value="precision_micro">Classification -- 'precision_micro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1043 <option value="precision_macro">Classification -- 'precision_macro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1044 <option value="precision_wighted">Classification -- 'precision_wighted'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1045 <option value="precision_samples">Classification -- 'precision_samples'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1046 <option value="recall">Classification -- 'recall'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1047 <option value="recall_micro">Classification -- 'recall_micro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1048 <option value="recall_macro">Classification -- 'recall_macro'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1049 <option value="recall_wighted">Classification -- 'recall_wighted'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1050 <option value="recall_samples">Classification -- 'recall_samples'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1051 <option value="roc_auc">Classification -- 'roc_auc'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1052 </param> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1053 </xml> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1054 |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1055 <xml name="secondary_scoring_selection_regression"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1056 <param name="secondary_scoring" type="select" multiple="true" label="Additional scoring used in multi-metric mode:" help="If the same metric with the primary is chosen, the metric will be ignored."> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1057 <option value="explained_variance">Regression -- 'explained_variance'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1058 <option value="neg_mean_absolute_error">Regression -- 'neg_mean_absolute_error'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1059 <option value="neg_mean_squared_error">Regression -- 'neg_mean_squared_error'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1060 <option value="neg_mean_squared_log_error">Regression -- 'neg_mean_squared_log_error'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1061 <option value="neg_median_absolute_error">Regression -- 'neg_median_absolute_error'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1062 <option value="r2">Regression -- 'r2'</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1063 </param> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1064 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1065 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1066 <xml name="pre_dispatch" token_type="hidden" token_default_value="all" token_help="Number of predispatched jobs for parallel execution"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1067 <param argument="pre_dispatch" type="@TYPE@" value="@DEFAULT_VALUE@" optional="true" label="pre_dispatch" help="@HELP@"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1068 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1069 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1070 <xml name="search_cv_estimator"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1071 <param name="infile_pipeline" type="data" format="zip" label="Choose the dataset containing pipeline object:"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1072 <section name="search_params_builder" title="Search parameters Builder" expanded="true"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1073 <repeat name="param_set" min="1" max="20" title="Parameter setting for search:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1074 <conditional name="search_param_selector"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1075 <param name="selected_param_type" type="select" label="Choose the transformation the parameter belongs to"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1076 <option value="final_estimator_p" selected="true">Final estimator</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1077 <option value="prep_1_p">Pre-processing step #1</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1078 <option value="prep_2_p">Pre-processing step #2</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1079 <option value="prep_3_p">Pre-processing step #3</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1080 <option value="prep_4_p">Pre-processing step #4</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1081 <option value="prep_5_p">Pre-processing step #5</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1082 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1083 <when value="final_estimator_p"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1084 <expand macro="search_param_input" /> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1085 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1086 <when value="prep_1_p"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1087 <expand macro="search_param_input" label="Pre_processing component #1 parameter:" help="One parameter per box. For example: with_centering: [True, False]."/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1088 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1089 <when value="prep_2_p"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1090 <expand macro="search_param_input" label="Pre_processing component #2 parameter:" help="One parameter per box. For example: k: [3, 5, 7, 9]. See bottom for more examples"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1091 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1092 <when value="prep_3_p"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1093 <expand macro="search_param_input" label="Pre_processing component #3 parameter:" help="One parameter per box. For example: n_components: [1, 10, 100, 1000]. See bottom for more examples"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1094 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1095 <when value="prep_4_p"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1096 <expand macro="search_param_input" label="Pre_processing component #4 parameter:" help="One parameter per box. For example: n_components: [1, 10, 100, 1000]. See bottom for more examples"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1097 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1098 <when value="prep_5_p"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1099 <expand macro="search_param_input" label="Pre_processing component #5 parameter:" help="One parameter per box. For example: affinity: ['euclidean', 'l1', 'l2', 'manhattan']. See bottom for more examples"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1100 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1101 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1102 </repeat> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1103 </section> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1104 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1105 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1106 <xml name="search_param_input" token_label="Estimator parameter:" token_help="One parameter per box. For example: C: [1, 10, 100, 1000]. See bottom for more examples"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1107 <param name="search_p" type="text" value="" optional="true" label="@LABEL@" help="@HELP@"> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1108 <sanitizer> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1109 <valid initial="default"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1110 <add value="'"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1111 <add value="""/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1112 <add value="["/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1113 <add value="]"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1114 </valid> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1115 </sanitizer> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1116 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1117 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1118 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1119 <xml name="search_cv_options"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1120 <expand macro="scoring_selection"/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1121 <expand macro="model_validation_common_options"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1122 <expand macro="pre_dispatch" value="2*n_jobs" help="Controls the number of jobs that get dispatched during parallel execution"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1123 <param argument="iid" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="iid" help="If True, data is identically distributed across the folds"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1124 <param argument="refit" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="refit" help="Refit an estimator using the best found parameters on the whole dataset."/> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1125 <param argument="error_score" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Raise fit error:" help="If false, the metric score is assigned to 0 if an error occurs in estimator fitting and FitFailedWarning is raised."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1126 <param argument="return_train_score" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="return_train_score" help=""/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1127 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1128 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1129 <xml name="estimator_selector_all"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1130 <conditional name="estimator_selector"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1131 <param name="selected_module" type="select" label="Choose the module that contains target estimator:" > |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1132 <option value="svm" selected="true">sklearn.svm</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1133 <option value="linear_model">sklearn.linear_model</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1134 <option value="ensemble">sklearn.ensemble</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1135 <option value="naive_bayes">sklearn.naive_bayes</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1136 <option value="tree">sklearn.tree</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1137 <option value="neighbors">sklearn.neighbors</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1138 <option value="xgboost">xgboost</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1139 <!--more--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1140 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1141 <when value="svm"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1142 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1143 <option value="LinearSVC" selected="true">LinearSVC</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1144 <option value="LinearSVR">LinearSVR</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1145 <option value="NuSVC">NuSVC</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1146 <option value="NuSVR">NuSVR</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1147 <option value="OneClassSVM">OneClassSVM</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1148 <option value="SVC">SVC</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1149 <option value="SVR">SVR</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1150 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1151 <expand macro="estimator_params_text"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1152 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1153 <when value="linear_model"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1154 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1155 <option value="ARDRegression" selected="true">ARDRegression</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1156 <option value="BayesianRidge">BayesianRidge</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1157 <option value="ElasticNet">ElasticNet</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1158 <option value="ElasticNetCV">ElasticNetCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1159 <option value="HuberRegressor">HuberRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1160 <option value="Lars">Lars</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1161 <option value="LarsCV">LarsCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1162 <option value="Lasso">Lasso</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1163 <option value="LassoCV">LassoCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1164 <option value="LassoLars">LassoLars</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1165 <option value="LassoLarsCV">LassoLarsCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1166 <option value="LassoLarsIC">LassoLarsIC</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1167 <option value="LinearRegression">LinearRegression</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1168 <option value="LogisticRegression">LogisticRegression</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1169 <option value="LogisticRegressionCV">LogisticRegressionCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1170 <option value="MultiTaskLasso">MultiTaskLasso</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1171 <option value="MultiTaskElasticNet">MultiTaskElasticNet</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1172 <option value="MultiTaskLassoCV">MultiTaskLassoCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1173 <option value="MultiTaskElasticNetCV">MultiTaskElasticNetCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1174 <option value="OrthogonalMatchingPursuit">OrthogonalMatchingPursuit</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1175 <option value="OrthogonalMatchingPursuitCV">OrthogonalMatchingPursuitCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1176 <option value="PassiveAggressiveClassifier">PassiveAggressiveClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1177 <option value="PassiveAggressiveRegressor">PassiveAggressiveRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1178 <option value="Perceptron">Perceptron</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1179 <option value="RANSACRegressor">RANSACRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1180 <option value="Ridge">Ridge</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1181 <option value="RidgeClassifier">RidgeClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1182 <option value="RidgeClassifierCV">RidgeClassifierCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1183 <option value="RidgeCV">RidgeCV</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1184 <option value="SGDClassifier">SGDClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1185 <option value="SGDRegressor">SGDRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1186 <option value="TheilSenRegressor">TheilSenRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1187 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1188 <expand macro="estimator_params_text"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1189 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1190 <when value="ensemble"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1191 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1192 <option value="AdaBoostClassifier" selected="true">AdaBoostClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1193 <option value="AdaBoostRegressor">AdaBoostRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1194 <option value="BaggingClassifier">BaggingClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1195 <option value="BaggingRegressor">BaggingRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1196 <option value="ExtraTreesClassifier">ExtraTreesClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1197 <option value="ExtraTreesRegressor">ExtraTreesRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1198 <option value="GradientBoostingClassifier">GradientBoostingClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1199 <option value="GradientBoostingRegressor">GradientBoostingRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1200 <option value="IsolationForest">IsolationForest</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1201 <option value="RandomForestClassifier">RandomForestClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1202 <option value="RandomForestRegressor">RandomForestRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1203 <option value="RandomTreesEmbedding">RandomTreesEmbedding</option> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1204 <!--option value="VotingClassifier">VotingClassifier</option--> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1205 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1206 <expand macro="estimator_params_text"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1207 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1208 <when value="naive_bayes"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1209 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1210 <option value="BernoulliNB" selected="true">BernoulliNB</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1211 <option value="GaussianNB">GaussianNB</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1212 <option value="MultinomialNB">MultinomialNB</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1213 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1214 <expand macro="estimator_params_text"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1215 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1216 <when value="tree"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1217 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1218 <option value="DecisionTreeClassifier" selected="true">DecisionTreeClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1219 <option value="DecisionTreeRegressor">DecisionTreeRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1220 <option value="ExtraTreeClassifier">ExtraTreeClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1221 <option value="ExtraTreeRegressor">ExtraTreeRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1222 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1223 <expand macro="estimator_params_text"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1224 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1225 <when value="neighbors"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1226 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1227 <option value="KNeighborsClassifier" selected="true">KNeighborsClassifier</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1228 <option value="KNeighborsRegressor">KNeighborsRegressor</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1229 <!--option value="BallTree">BallTree</option--> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1230 <!--option value="KDTree">KDTree</option--> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1231 <option value="KernelDensity">KernelDensity</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1232 <option value="LocalOutlierFactor">LocalOutlierFactor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1233 <option value="RadiusNeighborsClassifier">RadiusNeighborsClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1234 <option value="RadiusNeighborsRegressor">RadiusNeighborsRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1235 <option value="NearestCentroid">NearestCentroid</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1236 <option value="NearestNeighbors">NearestNeighbors</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1237 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1238 <expand macro="estimator_params_text"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1239 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1240 <when value="xgboost"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1241 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1242 <option value="XGBRegressor" selected="true">XGBRegressor</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1243 <option value="XGBClassifier">XGBClassifier</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1244 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1245 <expand macro="estimator_params_text"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1246 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1247 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1248 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1249 |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1250 <xml name="estimator_params_text" token_label="Type in parameter settings if different from default:" token_default_value='' |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1251 token_help="Dictionary-capable, e.g., C=1, kernel='linear'. No double quotes. Leave this box blank for default estimator."> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1252 <param name="text_params" type="text" value="@DEFAULT_VALUE@" optional="true" label="@LABEL@" help="@HELP@"> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1253 <sanitizer> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1254 <valid initial="default"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1255 <add value="'"/> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1256 </valid> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1257 </sanitizer> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1258 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1259 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1260 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1261 <xml name="kernel_approximation_all"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1262 <conditional name="kernel_approximation_selector"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1263 <param name="select_algorithm" type="select" label="Choose a kernel approximation algorithm:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1264 <option value="Nystroem" selected="true">Nystroem</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1265 <option value="RBFSampler">RBFSampler</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1266 <option value="AdditiveChi2Sampler">AdditiveChi2Sampler</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1267 <option value="SkewedChi2Sampler">SkewedChi2Sampler</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1268 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1269 <when value="Nystroem"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1270 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1271 help="Default(=blank): coef0=None, degree=None, gamma=None, kernel='rbf', kernel_params=None, n_components=100, random_state=None. No double quotes"/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1272 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1273 <when value="RBFSampler"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1274 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1275 help="Default(=blank): gamma=1.0, n_components=100, random_state=None."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1276 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1277 <when value="AdditiveChi2Sampler"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1278 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1279 help="Default(=blank): sample_interval=None, sample_steps=2."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1280 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1281 <when value="SkewedChi2Sampler"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1282 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1283 help="Default(=blank): n_components=100, random_state=None, skewedness=1.0."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1284 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1285 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1286 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1287 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1288 <xml name="matrix_decomposition_all"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1289 <conditional name="matrix_decomposition_selector"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1290 <param name="select_algorithm" type="select" label="Choose a matrix decomposition algorithm:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1291 <option value="DictionaryLearning" selected="true">DictionaryLearning</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1292 <option value="FactorAnalysis">FactorAnalysis</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1293 <option value="FastICA">FastICA</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1294 <option value="IncrementalPCA">IncrementalPCA</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1295 <option value="KernelPCA">KernelPCA</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1296 <option value="LatentDirichletAllocation">LatentDirichletAllocation</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1297 <option value="MiniBatchDictionaryLearning">MiniBatchDictionaryLearning</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1298 <option value="MiniBatchSparsePCA">MiniBatchSparsePCA</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1299 <option value="NMF">NMF</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1300 <option value="PCA">PCA</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1301 <option value="SparsePCA">SparsePCA</option> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1302 <!--option value="SparseCoder">SparseCoder</option--> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1303 <option value="TruncatedSVD">TruncatedSVD</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1304 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1305 <when value="DictionaryLearning"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1306 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1307 help="Default(=blank): alpha=1, code_init=None, dict_init=None, fit_algorithm='lars', max_iter=1000, n_components=None, random_state=None, split_sign=False, tol=1e-08, transform_algorithm='omp', transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1308 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1309 <when value="FactorAnalysis"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1310 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1311 help="Default(=blank): copy=True, iterated_power=3, max_iter=1000, n_components=None, noise_variance_init=None, random_state=0, svd_method='randomized', tol=0.01."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1312 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1313 <when value="FastICA"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1314 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1315 help="Default(=blank): algorithm='parallel', fun='logcosh', fun_args=None, max_iter=200, n_components=None, random_state=None, tol=0.0001, w_init=None, whiten=True. No double quotes."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1316 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1317 <when value="IncrementalPCA"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1318 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1319 help="Default(=blank): batch_size=None, copy=True, n_components=None, whiten=False."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1320 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1321 <when value="KernelPCA"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1322 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1323 help="Default(=blank): alpha=1.0, coef0=1, copy_X=True, degree=3, eigen_solver='auto', fit_inverse_transform=False, gamma=None, kernel='linear', kernel_params=None, max_iter=None, n_components=None, random_state=None, remove_zero_eig=False, tol=0. No double quotes."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1324 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1325 <when value="LatentDirichletAllocation"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1326 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1327 help="Default(=blank): batch_size=128, doc_topic_prior=None, evaluate_every=-1, learning_decay=0.7, learning_method=None, learning_offset=10.0, max_doc_update_iter=100, max_iter=10, mean_change_tol=0.001, n_components=10, n_topics=None, perp_tol=0.1, random_state=None, topic_word_prior=None, total_samples=1000000.0, verbose=0."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1328 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1329 <when value="MiniBatchDictionaryLearning"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1330 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1331 help="Default(=blank): alpha=1, batch_size=3, dict_init=None, fit_algorithm='lars', n_components=None, n_iter=1000, random_state=None, shuffle=True, split_sign=False, transform_algorithm='omp', transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1332 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1333 <when value="MiniBatchSparsePCA"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1334 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1335 help="Default(=blank): alpha=1, batch_size=3, callback=None, method='lars', n_components=None, n_iter=100, random_state=None, ridge_alpha=0.01, shuffle=True, verbose=False."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1336 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1337 <when value="NMF"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1338 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1339 help="Default(=blank): alpha=0.0, beta_loss='frobenius', init=None, l1_ratio=0.0, max_iter=200, n_components=None, random_state=None, shuffle=False, solver='cd', tol=0.0001, verbose=0."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1340 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1341 <when value="PCA"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1342 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1343 help="Default(=blank): copy=True, iterated_power='auto', n_components=None, random_state=None, svd_solver='auto', tol=0.0, whiten=False."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1344 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1345 <when value="SparsePCA"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1346 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1347 help="Default(=blank): U_init=None, V_init=None, alpha=1, max_iter=1000, method='lars', n_components=None, random_state=None, ridge_alpha=0.01, tol=1e-08, verbose=False."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1348 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1349 <when value="TruncatedSVD"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1350 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1351 help="Default(=blank): algorithm='randomized', n_components=2, n_iter=5, random_state=None, tol=0.0."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1352 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1353 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1354 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1355 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1356 <xml name="FeatureAgglomeration"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1357 <conditional name="FeatureAgglomeration_selector"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1358 <param name="select_algorithm" type="select" label="Choose the algorithm:"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1359 <option value="FeatureAgglomeration" selected="true">FeatureAgglomeration</option> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1360 </param> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1361 <when value="FeatureAgglomeration"> |
3
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1362 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1363 help="Default(=blank): affinity='euclidean', compute_full_tree='auto', connectivity=None, linkage='ward', memory=None, n_clusters=2, pooling_func=np.mean."/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1364 </when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1365 </conditional> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1366 </xml> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1367 |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1368 <xml name="skrebate"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1369 <conditional name="skrebate_selector"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1370 <param name="select_algorithm" type="select" label="Choose the algorithm:"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1371 <option value="ReliefF">ReliefF</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1372 <option value="SURF">SURF</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1373 <option value="SURFstar">SURFstar</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1374 <option value="MultiSURF">MultiSURF</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1375 <option value="MultiSURFstar">MultiSURFstar</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1376 <option value="TuRF">TuRF</option> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1377 </param> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1378 <when value="ReliefF"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1379 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1380 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, n_neighbors=100, verbose=False."/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1381 </when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1382 <when value="SURF"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1383 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1384 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False."/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1385 </when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1386 <when value="SURFstar"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1387 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1388 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False."/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1389 </when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1390 <when value="MultiSURF"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1391 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1392 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False."/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1393 </when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1394 <when value="MultiSURFstar"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1395 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1396 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False."/> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1397 </when> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1398 <when value="TuRF"> |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1399 <expand macro="estimator_params_text" |
297541cc26d0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
1400 help="Default(=blank): core_algorithm='ReliefF', discrete_threshold=10, n_features_to_select=10, n_neighbors=100, pct=0.5, verbose=False."/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1401 </when> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1402 </conditional> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1403 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1404 <!-- Outputs --> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1405 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1406 <xml name="output"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1407 <outputs> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1408 <data format="tabular" name="outfile_predict"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1409 <filter>selected_tasks['selected_task'] == 'load'</filter> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1410 </data> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1411 <data format="zip" name="outfile_fit"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1412 <filter>selected_tasks['selected_task'] == 'train'</filter> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1413 </data> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1414 </outputs> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1415 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1416 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1417 <!--Citations--> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1418 <xml name="eden_citation"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1419 <citations> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1420 <citation type="doi">10.5281/zenodo.15094</citation> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1421 </citations> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1422 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1423 |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1424 <xml name="sklearn_citation"> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1425 <citations> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1426 <citation type="bibtex"> |
4
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1427 @article{scikit-learn, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1428 title={Scikit-learn: Machine Learning in {P}ython}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1429 author={Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V. |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1430 and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P. |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1431 and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1432 Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1433 journal={Journal of Machine Learning Research}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1434 volume={12}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1435 pages={2825--2830}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1436 year={2011} |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1437 } |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1438 </citation> |
4
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
bgruening
parents:
3
diff
changeset
|
1439 <yield/> |
0
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1440 </citations> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
bgruening
parents:
diff
changeset
|
1441 </xml> |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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1442 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1443 <xml name="scipy_citation"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1444 <citations> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1445 <citation type="bibtex"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1446 @Misc{, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1447 author = {Eric Jones and Travis Oliphant and Pearu Peterson and others}, |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1448 title = {{SciPy}: Open source scientific tools for {Python}}, |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1449 year = {2001--}, |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1450 url = "http://www.scipy.org/", |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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1451 note = {[Online; accessed 2016-04-09]} |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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parents:
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|
1452 } |
7bee4014724a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1453 </citation> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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parents:
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|
1454 </citations> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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|
1455 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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1456 |
4
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1457 <xml name="skrebate_citation"> |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1458 <citation type="bibtex"> |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1459 @article{DBLP:journals/corr/abs-1711-08477, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1460 author = {Ryan J. Urbanowicz and |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1461 Randal S. Olson and |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1462 Peter Schmitt and |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1463 Melissa Meeker and |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1464 Jason H. Moore}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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parents:
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1465 title = {Benchmarking Relief-Based Feature Selection Methods}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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changeset
|
1466 journal = {CoRR}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1467 volume = {abs/1711.08477}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1468 year = {2017}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1469 url = {http://arxiv.org/abs/1711.08477}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1470 archivePrefix = {arXiv}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1471 eprint = {1711.08477}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1472 timestamp = {Mon, 13 Aug 2018 16:46:04 +0200}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1473 biburl = {https://dblp.org/rec/bib/journals/corr/abs-1711-08477}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1474 bibsource = {dblp computer science bibliography, https://dblp.org} |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1475 } |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1476 </citation> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1477 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1478 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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|
1479 <xml name="xgboost_citation"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1480 <citation type="bibtex"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1481 @inproceedings{Chen:2016:XST:2939672.2939785, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1482 author = {Chen, Tianqi and Guestrin, Carlos}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1483 title = {{XGBoost}: A Scalable Tree Boosting System}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1484 booktitle = {Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1485 series = {KDD '16}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1486 year = {2016}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1487 isbn = {978-1-4503-4232-2}, |
41d0edb7d1fc
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1488 location = {San Francisco, California, USA}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1489 pages = {785--794}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1490 numpages = {10}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1491 url = {http://doi.acm.org/10.1145/2939672.2939785}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1492 doi = {10.1145/2939672.2939785}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1493 acmid = {2939785}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1494 publisher = {ACM}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1495 address = {New York, NY, USA}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1496 keywords = {large-scale machine learning}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1497 } |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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1498 </citation> |
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1499 </xml> |
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1500 |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cbb681224f23fa95783514f949c97d6c2c60966
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1501 </macros> |