Mercurial > repos > bgruening > spectral_hk
annotate spectral_hk.xml @ 3:8ca108879c60 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
author | bgruening |
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date | Tue, 07 May 2019 13:42:35 -0400 |
parents | f804270f3183 |
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rev | line source |
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8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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1 <tool id="spectral_hk" name="Spectral hashkey" version="0.1.0"> |
8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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2 <description>- convert InChIs to spectral hashkeys</description> |
0 | 3 <requirements> |
4 <requirement type="package" version="0.1">spectral_hk</requirement> | |
5 </requirements> | |
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454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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6 <command detect_errors="aggressive"> |
454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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7 <![CDATA[ |
454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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8 spectral_hk '$input' > '$output' |
454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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9 ]]> |
0 | 10 </command> |
11 <inputs> | |
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8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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12 <param format="inchi" name="input" type="data" label="Input file" /> |
0 | 13 </inputs> |
14 <outputs> | |
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f804270f3183
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit 6de5cb928a72510f102791df665bb95a813cfb16
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15 <data format="tabular" name="output" /> |
0 | 16 </outputs> |
17 <tests> | |
18 <test> | |
19 <param name="input" value="molecules.inchi" /> | |
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454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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20 <output name="output" file="result_spectral_hk.tab" /> |
0 | 21 </test> |
22 </tests> | |
23 <help> | |
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454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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24 <![CDATA[ |
0 | 25 **What it does** |
26 | |
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8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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27 This tool converts InChIs into spectral hash codes. A spectral hash code is a 30-character (150-bit) alphanumeric hash string that uniquely encodes an InChI. See the following example: |
0 | 28 |
29 .. image:: $PATH_TO_IMAGES/bild.png | |
30 | |
31 DMLC7QBAS17P7JKN43WHM2J1VA67GL | |
32 | |
33 **References** | |
34 | |
35 - https://bitbucket.org/ncgc/spectral_hk/overview | |
36 - http://tripod.nih.gov/ | |
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454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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37 ]]> |
0 | 38 </help> |
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454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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39 <citations> |
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8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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40 <citation type="bibtex"> |
8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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41 @article{rdkit, |
8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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42 author = {NIH Chemical Genomics Center}, |
8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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43 title = {Spectral HK}, |
8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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44 url ={https://bitbucket.org/ncgc/spectral_hk/overview} |
8ca108879c60
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit ed9b6859de648aa5f7cde483732f5df20aaff90e
bgruening
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45 }</citation> |
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454de6290eb0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/spectral_hk commit a44364ca5bccd47f9f331143e1abb286096e8807
bgruening
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46 </citations> |
0 | 47 </tool> |