split_file_to_collection: split_file_to

annotate split_file_to_collection.xml @ 5:e77b954f0da5 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219"

author	bgruening
date	Fri, 11 Oct 2019 18:24:43 -0400
parents	0850f2dfba13
children	6cbe2f30c2d7

rev	line source
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	1 <tool id="split_file_to_collection" name="Split file" version="0.4.0">
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	2 <description>to dataset collection</description>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	3 <macros>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	4 <xml name="regex_sanitizer">
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	5 <sanitizer>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	6 <valid>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	7 <add preset="string.printable"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	8 <remove value="\" />
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	9 <remove value="'" />
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	10 </valid>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	11 <mapping initial="none">
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	12 <add source="\" target="__backslash__" />
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	13 <add source="'" target="__sq__"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	14 </mapping>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	15 </sanitizer>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	16 </xml>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	17 <xml name="numnew_fname">
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	18 <conditional name="select_mode">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	19 <param name="mode" type="select" label="Specify number of output files or number of records per file?" help="Specify the number of records ('chunk size') to place in each file. The 'Number of new files' parameter will be ignored.">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	20 <option value="chunk">Number of records per file ('chunk mode')</option>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	21 <option value="numnew">Number of output files</option>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	22 </param>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	23 <when value="chunk">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	24 <param name="chunksize" type="integer" label="Chunk size" min="1" value="1" help="Number of records per output file."/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	25 </when>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	26 <when value="numnew">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	27 <param name="numnew" type="integer" label="Number of new files" min="1" value="1"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	28 </when>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	29 </conditional>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	30 <param name="newfilenames" type="text" label="Base name for new files in collection"
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	31 help="This will increment automatically - if input is 'file', then output is 'file0', 'file1', etc." value="split_file"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	32 <conditional name="select_allocate">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	33 <param name="allocate" type="select" label="Method to allocate records to new files" help="See the information section for a diagram">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	34 <option value="random">At random</option>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	35 <option value="batch">Maintain record order</option>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	36 <option value="byrow" selected="true">Alternate output files</option>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	37 </param>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	38 <when value="random">
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	39 <param name="seed" type="integer" label="Random number seed" help="For reproducibility, set this to some arbitrary integer (e.g. '1010')" value="1010"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	40 </when>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	41 <when value="batch">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	42 </when>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	43 <when value="byrow">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	44 </when>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	45 </conditional>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	46 </xml>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	47 </macros>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	48 <requirements>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	49 <requirement type="package" version="3.5">python</requirement>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	50 </requirements>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	51 <command detect_errors="aggressive"><![CDATA[
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	52 mkdir ./out &&
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	53 python '$__tool_directory__/split_file_to_collection.py'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	54 --out ./out
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	55 --in '$split_parms.input'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	56 --ftype '$split_parms.select_ftype'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	57 #if $split_parms.select_ftype == "tabular":
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	58 --top '$split_parms.top'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	59 --by '$split_parms.split_by.select_split_by'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	60 #if $split_parms.split_by.select_split_by == "col":
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	61 --id_column '$split_parms.split_by.id_col'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	62 --match '$split_parms.split_by.match_regex'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	63 --sub '$split_parms.split_by.sub_regex'
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	64 #else
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	65 #if $split_parms.split_by.select_mode.mode == "numnew":
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	66 --numnew '$split_parms.split_by.select_mode.numnew'
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	67 #else
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	68 --chunksize $split_parms.split_by.select_mode.chunksize
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	69 #end if
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	70 #if $split_parms.split_by.select_allocate.allocate == "random":
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	71 --rand
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	72 --seed '$split_parms.split_by.rand.seed'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	73 #end if
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	74 #if $split_parms.split_by.select_allocate.allocate == "batch":
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	75 --batch
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	76 #end if
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	77 #end if
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	78 #else
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	79 #if $split_parms.select_ftype == "generic"
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	80 #if $split_parms.split_method.select_split_method == "regex"
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	81 --generic_re '$split_parms.split_method.generic_regex'
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	82 #if $split_parms.split_method.split_after == 'true':
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	83 --split_after
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	84 #end if
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	85 #else
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	86 --generic_num $split_parms.split_method.record_length
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	87 #end if
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	88 #end if
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	89 #if $split_parms.select_mode.mode == "numnew":
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	90 --numnew '$split_parms.select_mode.numnew'
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	91 #else
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	92 --chunksize $split_parms.select_mode.chunksize
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	93 #end if
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	94 #if $split_parms.select_allocate.allocate == "random":
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	95 --rand
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	96 --seed '$split_parms.select_allocate.seed'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	97 #end if
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	98 #if $split_parms.select_allocate.allocate == "batch":
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	99 --batch
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	100 #end if
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	101 #end if
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	102 #if ($split_parms.select_ftype == "tabular" and $split_parms.split_by.select_split_by == "row"):
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	103 --file_names '$split_parms.split_by.newfilenames'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	104 --file_ext '$split_parms.select_ftype'
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	105 #end if
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	106 #if $split_parms.select_ftype != "tabular":
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	107 --file_names '$split_parms.newfilenames'
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	108 #if $split_parms.select_ftype == "generic"
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	109 --file_ext '$split_parms.input.ext'
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	110 #else
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	111 --file_ext '$split_parms.select_ftype'
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	112 #end if
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	113 #end if
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	114 ]]></command>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	115 <inputs>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	116 <conditional name="split_parms">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	117 <param name="select_ftype" type="select" label="Select the file type to split">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	118 <option value="mgf">MGF</option>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	119 <option value="fastq">FASTQ</option>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	120 <option value="tabular">Tabular</option>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	121 <option value="fasta">FASTA</option>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	122 <option value="sdf">SD-files</option>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	123 <option value="txt">Text files</option>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	124 <option value="generic">Generic</option>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	125 </param>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	126 <when value="tabular">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	127 <param name="input" type="data" format="tabular" label="Tabular file to split"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	128 <param name="top" type="integer" value="0" min="0" label="Number of header lines to transfer to new files"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	129 <conditional name="split_by">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	130 <param name="select_split_by" type="select" label="Split by row or by a column?">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	131 <option value="row">By row</option>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	132 <option value="col">By column</option>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	133 </param>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	134 <when value="col">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	135 <param name="id_col" type="data_column" label="Column to split on" data_ref="input"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	136 <param name="match_regex" type="text" label="Regex to match contents of id column" value="(.*)">
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	137 <expand macro="regex_sanitizer"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	138 </param>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	139 <param name="sub_regex" type="text" label="Pattern to replace match with" value="\1">
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	140 <expand macro="regex_sanitizer"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	141 </param>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	142 </when>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	143 <when value="row">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	144 <expand macro="numnew_fname"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	145 </when>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	146 </conditional>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	147 </when>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	148 <when value="mgf">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	149 <param name="input" type="data" format="mgf" label="MGF file to split"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	150 <expand macro="numnew_fname"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	151 </when>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	152 <when value="fastq">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	153 <param name="input" type="data" format="fastq" label="FASTQ file to split"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	154 <expand macro="numnew_fname"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	155 </when>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	156 <when value="fasta">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	157 <param name="input" type="data" format="fasta" label="FASTA file to split"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	158 <expand macro="numnew_fname"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	159 </when>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	160 <when value="sdf">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	161 <param name="input" type="data" format="sdf" label="SD-file to split"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	162 <expand macro="numnew_fname"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	163 </when>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	164 <when value="txt">
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	165 <param name="input" type="data" format="txt" label="Text file to split"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	166 <expand macro="numnew_fname"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	167 </when>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	168 <when value="generic">
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	169 <param name="input" type="data" format="txt" label="File to split"/>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	170 <conditional name="split_method">
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	171 <param name="select_split_method" type="select" label="Method to split files">
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	172 <option value="regex">Specify record separator as regular expression</option>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	173 <option value="number">Specify number of lines after which a record ends</option>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	174 </param>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	175 <when value="regex">
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	176 <param name="generic_regex" type="text" label="Regex to match record separator" value="^.*">
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	177 <expand macro="regex_sanitizer"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	178 </param>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	179 <param name="split_after" type="select" value="false" label="Split records before or after the separator?" help="If before, the separator will appear at the start of each record; if after, at the end">
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	180 <option value="false" selected="true">Before</option>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	181 <option value="true">After</option>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	182 </param>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	183 </when>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	184 <when value="number">
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	185 <param name="record_length" type="integer" value="1" label="Record length" help="The number of lines after which each record ends"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	186 </when>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	187 </conditional>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	188 <expand macro="numnew_fname"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	189 </when>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	190 </conditional>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	191 </inputs>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	192 <outputs>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	193 <collection name="list_output_tab" type="list" label="${tool.name} on ${on_string}">
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	194 <discover_datasets pattern="__name__" directory="out" visible="false" format="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	195 <filter>split_parms['select_ftype'] == "tabular"</filter>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	196 </collection>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	197 <collection name="list_output_mgf" type="list" label="${tool.name} on ${on_string}">
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	198 <discover_datasets pattern="__name__" directory="out" visible="false" format="mgf"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	199 <filter>split_parms['select_ftype'] == "mgf"</filter>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	200 </collection>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	201 <collection name="list_output_fasta" type="list" label="${tool.name} on ${on_string}">
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	202 <discover_datasets pattern="__name__" directory="out" visible="false" format="fasta"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	203 <filter>split_parms['select_ftype'] == "fasta"</filter>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	204 </collection>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	205 <collection name="list_output_fastq" type="list" label="${tool.name} on ${on_string}">
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	206 <discover_datasets pattern="__name__" directory="out" visible="false" format="fastq"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	207 <filter>split_parms['select_ftype'] == "fastq"</filter>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	208 </collection>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	209 <collection name="list_output_sdf" type="list" label="${tool.name} on ${on_string}">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	210 <discover_datasets pattern="__name__" directory="out" visible="false" format="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	211 <filter>split_parms['select_ftype'] == "sdf"</filter>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	212 </collection>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	213 <collection name="list_output_txt" type="list" label="${tool.name} on ${on_string}">
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	214 <discover_datasets pattern="__name__" directory="out" visible="false" format="txt"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	215 <filter>split_parms['select_ftype'] == "txt"</filter>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	216 </collection>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	217 <collection name="list_output_generic" type="list" label="${tool.name} on ${on_string}">
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	218 <discover_datasets pattern="__name_and_ext__" directory="out" visible="false"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	219 <filter>split_parms['select_ftype'] == "generic"</filter>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	220 </collection>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	221 </outputs>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	222 <tests>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	223 <!-- 1 -->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	224 <test>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	225 <param name="input" value="test.tabular" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	226 <param name="select_ftype" value="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	227 <param name="select_split_by" value="col"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	228 <param name="id_col" value="1"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	229 <param name="match_regex" value="(.*)\.mgf"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	230 <param name="sub_regex" value="\1.tab"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	231 <param name="top" value="2"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	232 <output_collection name="list_output_tab" type="list">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	233 <element name="foo.tab" file="foo.tab" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	234 <element name="foo2.tab" file="foo2.tab" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	235 <element name="foo3.tab" file="foo3.tab" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	236 </output_collection>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	237 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	238 <!-- 2 -->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	239 <test>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	240 <param name="input" value="test.tabular" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	241 <param name="select_ftype" value="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	242 <param name="select_split_by" value="row"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	243 <param name="top" value="2"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	244 <param name="mode" value="numnew"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	245 <param name="numnew" value="2"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	246 <param name="newfilenames" value="test"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	247 <output_collection name="list_output_tab" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	248 <element name="test_000000.tabular" file="test_0.tabular" ftype="tabular"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	249 <element name="test_000001.tabular" file="test_1.tabular" ftype="tabular"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	250 </output_collection>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	251 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	252 <!-- 3 -->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	253 <test>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	254 <param name="input" value="test.tabular" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	255 <param name="select_ftype" value="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	256 <param name="select_split_by" value="row"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	257 <param name="top" value="2"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	258 <param name="mode" value="numnew"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	259 <param name="numnew" value="2"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	260 <param name="newfilenames" value="batch_tab"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	261 <param name="allocate" value="batch"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	262 <output_collection name="list_output_tab" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	263 <element name="batch_tab_000000.tabular" file="batch_tab_0.tabular" ftype="tabular"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	264 <element name="batch_tab_000001.tabular" file="batch_tab_1.tabular" ftype="tabular"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	265 </output_collection>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	266 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	267 <!-- 4 -->
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	268 <test>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	269 <param name="input" value="test.tabular" ftype="tabular"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	270 <param name="select_ftype" value="tabular"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	271 <param name="select_split_by" value="row"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	272 <param name="top" value="2"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	273 <param name="mode" value="chunk"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	274 <param name="chunksize" value="2"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	275 <param name="newfilenames" value="batch_tab"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	276 <param name="allocate" value="batch"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	277 <output_collection name="list_output_tab" type="list">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	278 <element name="batch_tab_000000.tabular" file="batch_tab_0.tabular" ftype="tabular"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	279 <element name="batch_tab_000001.tabular" file="batch_tab_1.tabular" ftype="tabular"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	280 </output_collection>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	281 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	282 <!-- 5 -->
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	283 <test>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	284 <param name="select_ftype" value="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	285 <param name="input" value="karyotype.txt" ftype="txt"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	286 <param name="mode" value="numnew"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	287 <param name="numnew" value="24"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	288 <param name="newfilenames" value="chr"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	289 <param name="allocate" value="batch"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	290
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	291 <output_collection name="list_output_txt" type="list">
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	292 <element name="chr_000000.txt" file="chr_000000.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	293 <element name="chr_000001.txt" file="chr_000001.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	294 <element name="chr_000002.txt" file="chr_000002.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	295 <element name="chr_000003.txt" file="chr_000003.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	296 <element name="chr_000004.txt" file="chr_000004.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	297 <element name="chr_000005.txt" file="chr_000005.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	298 <element name="chr_000006.txt" file="chr_000006.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	299 <element name="chr_000007.txt" file="chr_000007.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	300 <element name="chr_000008.txt" file="chr_000008.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	301 <element name="chr_000009.txt" file="chr_000009.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	302 <element name="chr_000010.txt" file="chr_000010.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	303 <element name="chr_000011.txt" file="chr_000011.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	304 <element name="chr_000012.txt" file="chr_000012.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	305 <element name="chr_000013.txt" file="chr_000013.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	306 <element name="chr_000014.txt" file="chr_000014.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	307 <element name="chr_000015.txt" file="chr_000015.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	308 <element name="chr_000016.txt" file="chr_000016.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	309 <element name="chr_000017.txt" file="chr_000017.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	310 <element name="chr_000018.txt" file="chr_000018.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	311 <element name="chr_000019.txt" file="chr_000019.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	312 <element name="chr_000020.txt" file="chr_000020.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	313 <element name="chr_000021.txt" file="chr_000021.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	314 <element name="chr_000022.txt" file="chr_000022.txt" ftype="txt"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	315 <element name="chr_000023.txt" file="chr_000023.txt" ftype="txt"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	316 </output_collection>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	317 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	318 <!-- 6 -->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	319 <test>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	320 <param name="input" value="psm.tabular" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	321 <param name="select_ftype" value="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	322 <param name="select_split_by" value="col"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	323 <param name="id_col" value="10"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	324 <param name="match_regex" value="(.*)\.mgf"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	325 <param name="sub_regex" value="\1.tab"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	326 <param name="top" value="1"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	327 <output_collection name="list_output_tab" type="list">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	328 <element name="file1.tab" file="file1.tab" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	329 <element name="file2.tab" file="file2.tab" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	330 <element name="file3.tab" file="file3.tab" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	331 <element name="file4.tab" file="file4.tab" ftype="tabular"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	332 </output_collection>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	333 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	334 <!-- 7 splitting of mgf -->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	335 <test>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	336 <param name="input" value="demo758Dacentroid.mgf" ftype="mgf"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	337 <param name="select_ftype" value="mgf"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	338 <param name="mode" value="numnew"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	339 <param name="numnew" value="3"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	340 <param name="newfilenames" value="demo"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	341 <output_collection name="list_output_mgf" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	342 <element name="demo_000000.mgf" file="demo_0.mgf" ftype="mgf"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	343 <element name="demo_000001.mgf" file="demo_1.mgf" ftype="mgf"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	344 <element name="demo_000002.mgf" file="demo_2.mgf" ftype="mgf"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	345 </output_collection>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	346 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	347 <!-- 8 splitting of fasta + desired number of files-->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	348 <test>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	349 <param name="input" value="test.fasta" ftype="fasta"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	350 <param name="select_ftype" value="fasta"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	351 <param name="mode" value="numnew"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	352 <param name="numnew" value="2"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	353 <param name="newfilenames" value="test"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	354 <output_collection name="list_output_fasta" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	355 <element name="test_000000.fasta" file="test_0.fasta" ftype="fasta"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	356 <element name="test_000001.fasta" file="test_1.fasta" ftype="fasta"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	357 </output_collection>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	358 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	359 <!-- 9 splitting of fasta + desired chunksize -->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	360 <test>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	361 <param name="input" value="test.fasta" ftype="fasta"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	362 <param name="select_ftype" value="fasta"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	363 <param name="mode" value="chunk"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	364 <param name="chunksize" value="3"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	365 <param name="newfilenames" value="test"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	366 <output_collection name="list_output_fasta" type="list">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	367 <element name="test_000000.fasta" file="test_0.fasta" ftype="fasta"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	368 <element name="test_000001.fasta" file="test_1.fasta" ftype="fasta"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	369 </output_collection>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	370 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	371 <!-- 10 splitting of fastq, specify desired number of files -->
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	372 <test>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	373 <param name="input" value="test.fastq" ftype="fastq"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	374 <param name="select_ftype" value="fastq"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	375 <param name="mode" value="numnew"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	376 <param name="numnew" value="2"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	377 <param name="newfilenames" value="test"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	378 <output_collection name="list_output_fastq" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	379 <element name="test_000000.fastq" file="test_0.fastq" ftype="fastq"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	380 <element name="test_000001.fastq" file="test_1.fastq" ftype="fastq"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	381 </output_collection>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	382 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	383 <!-- 11 splitting of fastq, specify desired number of files
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	384 same as previous test, but by specifying the number of lines per record
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	385 explicitely (not using the preset of the python script) -->
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	386 <test>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	387 <param name="input" value="test.fastq" ftype="fastq"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	388 <param name="select_ftype" value="generic"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	389 <param name="select_split_method" value="number"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	390 <param name="record_length" value="4"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	391 <param name="mode" value="numnew"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	392 <param name="numnew" value="2"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	393 <param name="newfilenames" value="test"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	394 <output_collection name="list_output_generic" type="list">
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	395 <element name="test_000000" file="test_0.fastq" ftype="fastq"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	396 <element name="test_000001" file="test_1.fastq" ftype="fastq"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	397 </output_collection>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	398 </test>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	399 <!-- splitting of fasta w random assignment and specific filename prefix -->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	400 <test>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	401 <param name="input" value="test.fasta" ftype="fasta"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	402 <param name="select_ftype" value="fasta"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	403 <param name="mode" value="numnew"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	404 <param name="numnew" value="2"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	405 <param name="newfilenames" value="rand"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	406 <param name="allocate" value="random"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	407 <param name="seed" value="1010"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	408 <output_collection name="list_output_fasta" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	409 <element name="rand_000000.fasta" file="rand_0.fasta" ftype="fasta"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	410 <element name="rand_000001.fasta" file="rand_1.fasta" ftype="fasta"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	411 </output_collection>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	412 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	413 <!-- splitting of fasta w batch assignment and specific filename prefix -->
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	414 <test>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	415 <param name="input" value="test.fasta" ftype="fasta"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	416 <param name="select_ftype" value="fasta"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	417 <param name="mode" value="numnew"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	418 <param name="numnew" value="2"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	419 <param name="newfilenames" value="fasta_batch"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	420 <param name="allocate" value="batch"/>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	421 <output_collection name="list_output_fasta" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	422 <element name="fasta_batch_000000.fasta" file="fasta_batch_0.fasta" ftype="fasta"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	423 <element name="fasta_batch_000001.fasta" file="fasta_batch_1.fasta" ftype="fasta"/>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	424 </output_collection>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	425 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	426 <!-- splitting of txt w default (alternating assignment) -->
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	427 <test>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	428 <param name="input" value="test.tabular" ftype="txt"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	429 <param name="select_ftype" value="txt"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	430 <param name="mode" value="numnew"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	431 <param name="numnew" value="2"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	432 <param name="newfilenames" value="test"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	433 <output_collection name="list_output_txt" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	434 <element name="test_000000.txt" file="test_0.tabular" ftype="txt" lines_diff="1"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	435 <element name="test_000001.txt" file="test_1.tabular" ftype="txt" lines_diff="1"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	436 </output_collection>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	437 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	438 <!-- generic-regex splitting (of txt) w default assignement (alternating) -->
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	439 <test>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	440 <param name="input" value="test.tabular" ftype="txt"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	441 <param name="select_ftype" value="generic"/>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	442 <param name="select_split_method" value="regex"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	443 <param name="generic_regex" value="^.*"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	444 <param name="mode" value="numnew"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	445 <param name="numnew" value="2"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	446 <param name="newfilenames" value="test"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	447 <output_collection name="list_output_generic" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	448 <element name="test_000000" file="test_0.tabular" ftype="txt" lines_diff="1"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	449 <element name="test_000001" file="test_1.tabular" ftype="txt" lines_diff="1"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	450 </output_collection>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	451 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	452 <!-- generic-regex splitting (of a fasta) w random assignment -->
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	453 <test>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	454 <param name="input" value="test.fasta" ftype="fasta"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	455 <param name="select_ftype" value="generic"/>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	456 <param name="select_split_method" value="regex"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	457 <param name="generic_regex" value="^>.*"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	458 <param name="mode" value="numnew"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	459 <param name="numnew" value="2"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	460 <param name="newfilenames" value="rand"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	461 <param name="allocate" value="random"/>
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	462 <param name="seed" value="1010"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	463 <output_collection name="list_output_generic" type="list">
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	464 <element name="rand_000000" file="rand_0.fasta" ftype="fasta"/>
2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	465 <element name="rand_000001" file="rand_1.fasta" ftype="fasta"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	466 </output_collection>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	467 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	468 <!-- sdf + specify desired number of files -->
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	469 <test>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	470 <param name="input" value="3_molecules.sdf" ftype="sdf"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	471 <param name="select_ftype" value="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	472 <param name="mode" value="numnew"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	473 <param name="numnew" value="10"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	474 <param name="newfilenames" value="mol"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	475 <param name="allocate" value="batch"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	476 <output_collection name="list_output_sdf" type="list">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	477 <element name="mol_000000.sdf" file="mol_0.sdf" ftype="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	478 <element name="mol_000001.sdf" file="mol_1.sdf" ftype="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	479 <element name="mol_000002.sdf" file="mol_2.sdf" ftype="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	480 </output_collection>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	481 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	482 <!-- sdf + specify desired number of records per file (chunksize) -->
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	483 <test>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	484 <param name="input" value="3_molecules.sdf" ftype="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	485 <param name="select_ftype" value="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	486 <param name="mode" value="chunk"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	487 <param name="chunksize" value="1"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	488 <param name="newfilenames" value="mol"/>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	489 <param name="allocate" value="batch"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	490 <output_collection name="list_output_sdf" type="list">
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	491 <element name="mol_000000.sdf" file="mol_0.sdf" ftype="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	492 <element name="mol_000001.sdf" file="mol_1.sdf" ftype="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	493 <element name="mol_000002.sdf" file="mol_2.sdf" ftype="sdf"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	494 </output_collection>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	495 </test>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	496 <!-- test split_after (by splitting fasta files after non-header lines) -->
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	497 <test>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	498 <param name="input" value="test.fasta" ftype="fasta"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	499 <param name="select_ftype" value="generic"/>
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	500 <param name="select_split_method" value="regex"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	501 <param name="generic_regex" value="^[^>].*"/>
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	502 <param name="split_after" value="true"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	503 <param name="mode" value="numnew"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	504 <param name="numnew" value="2"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	505 <param name="newfilenames" value="rand"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	506 <param name="allocate" value="random"/>
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	507 <param name="seed" value="1010"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	508 <output_collection name="list_output_generic" type="list">
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	509 <element name="rand_000000" file="rand_0.fasta" ftype="fasta"/>
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	510 <element name="rand_000001" file="rand_1.fasta" ftype="fasta"/>
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	511 </output_collection>
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	512 </test>
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	513 </tests>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	514 <help><![CDATA[
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	515 Split file into a dataset collection
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	516
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	517 This tool splits a data set consisting of records into multiple data sets within a collection.
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	518 A record can be for instance simply a line, a FASTA sequence (header + sequence), a FASTQ sequence
5 e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	519 (headers + sequence + qualities), etc. The important property is that the records either have a
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	520 specific length (e.g. 4 lines for FASTQ) or that the beginning/end of a new record
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	521 can be specified by a regular expression, e.g. "." for lines or ">." for FASTA.
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	522 The tool has presets for text, tabular data sets (which are split after each line), FASTA (new records start with ">.*"), FASTQ (records consist of 4 lines), SDF (records start with "^BEGIN IONS") and MGF (records end with "^$$$$").
e77b954f0da5 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 6fa2a0294d615c9f267b766337dca0b2d3637219" bgruening parents: 4 diff changeset	523 For other data types the text delimiting records or the number of lines making up a record can be specified manually using the generic splitter.
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	524 If the generic splitter is used, an option is also available to split records either before or after the
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	525 separator. If a preset filetype is used, this is selected automatically (after for SDF, before for all
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	526 others).
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	527
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	528 If splitting by line (or by some other item, like a FASTA entry or an MGF record), the splitting can be either done alternatingly, in original record order, or at random.
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	529
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	530 If t records are to be distributed to n new data sets, then the i-th record goes to data set
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	531
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	532 * floor(i / t * n) (for batch),
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	533 * i % n (for alternating), or
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	534 * a random data set
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	535
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	536 For instance, t=5 records are distributed as follows on n=2 data sets
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	537
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	538 = === === ====
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	539 i bat alt rand
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	540 = === === ====
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	541 0 0 0 0
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	542 1 0 1 1
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	543 2 0 0 1
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	544 3 1 1 0
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	545 4 1 0 0
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	546 = === === ====
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	547
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	548 If the five records are distributed on n=3 data sets:
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	549
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	550 = === === ====
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	551 i bat alt rand
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	552 = === === ====
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	553 0 0 0 0
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	554 1 0 1 1
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	555 2 1 2 2
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	556 3 1 0 0
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	557 4 2 1 1
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	558 = === === ====
d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	559
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	560 Note that there are no guarantees when splitting at random that every result file will be non-empty, so downstream tools should be able to gracefully handle empty files.
2 d150ac3d853d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 06ffe450bafa280eee8a4331c9cfc9e1ece7c522" bgruening parents: 1 diff changeset	561
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	562 If a tabular file is used as input, you may choose to split by line or by column. If split by column, a new file is created for each unique value in the column.
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	563 In addition, (Python) regular expressions may be used to transform the value in the column to a new value. Caution should be used with this feature, as it could transform all values to the same value, or other unexpected behavior.
3 2ddc36385d7a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 8d069684e155d2f5b6fae06d14d98ce41321da53" bgruening parents: 2 diff changeset	564 The default regular expression uses each value in the column without modifying it.
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	565
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	566 Two modes are available for the tool. For the main mode, the number of output files is selected. In this case, records are shared out between this number of files. Alternatively, 'chunking mode' can be selected, which puts a fixed number of records (the 'chunk size') into each output file.
0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	567
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	568 ]]></help>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	569 <citations>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	570 <citation type="bibtex">
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	571 @misc{githubsplit,
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	572 author = {Easterly, Caleb},
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	573 year = {2018},
4 0850f2dfba13 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 872590086696cfbc248519507ecb9063926297ad" bgruening parents: 3 diff changeset	574 title = {A Galaxy tool for splitting a file into a collection},
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	575 publisher = {GitHub},
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	576 journal = {GitHub repository},
1 750c1684d47c planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit c9554ac81af24fc22435750fa4ef8c5c6fc1dc25 bgruening parents: 0 diff changeset	577 url = {https://github.com/bgruening/galaxytools/tools/text_processing/split_file_to_collection},
0 de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	578 }</citation>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	579 </citations>
de3c2c88e710 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 85015046a6d8a9dc0f4b54611986676aceeeadd7 bgruening parents: diff changeset	580 </tool>

Mercurial > repos > bgruening > split_file_to_collection

annotate split_file_to_collection.xml @ 5:e77b954f0da5 draft