Mercurial > repos > bgruening > split_file_to_collection

comparison split_file_to_collection.xml @ 10:2dae863c8f42 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit 5d21f3d6a3a84b4737a2091ae0d772471eb389dd
author bgruening
date Thu, 23 May 2024 15:03:47 +0000
parents baabc30154cd
children
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9:baabc30154cd 10:2dae863c8f42
1 <tool id="split_file_to_collection" name="Split file" version="0.5.1"> 1 <tool id="split_file_to_collection" name="Split file" version="0.5.2">
2 <description>to dataset collection</description> 2 <description>to dataset collection</description>
3 <macros> 3 <macros>
4 <xml name="regex_sanitizer"> 4 <xml name="regex_sanitizer">
5 <sanitizer> 5 <sanitizer>
6 <valid> 6 <valid>
188 <expand macro="numnew_fname"/> 188 <expand macro="numnew_fname"/>
189 </when> 189 </when>
190 </conditional> 190 </conditional>
191 </inputs> 191 </inputs>
192 <outputs> 192 <outputs>
193 <collection name="list_output_tab" type="list" label="${tool.name} on ${on_string}"> 193 <collection name="list_output_tab" type="list" label="${tool.name} on ${on_string}: tabular">
194 <discover_datasets pattern="__name__" directory="out" visible="false" format="tabular"/> 194 <discover_datasets pattern="__name__" directory="out" visible="false" format="tabular"/>
195 <filter>split_parms['select_ftype'] == "tabular"</filter> 195 <filter>split_parms['select_ftype'] == "tabular"</filter>
196 </collection> 196 </collection>
197 <collection name="list_output_mgf" type="list" label="${tool.name} on ${on_string}"> 197 <collection name="list_output_mgf" type="list" label="${tool.name} on ${on_string}: mgf">
198 <discover_datasets pattern="__name__" directory="out" visible="false" format="mgf"/> 198 <discover_datasets pattern="__name__" directory="out" visible="false" format="mgf"/>
199 <filter>split_parms['select_ftype'] == "mgf"</filter> 199 <filter>split_parms['select_ftype'] == "mgf"</filter>
200 </collection> 200 </collection>
201 <collection name="list_output_fasta" type="list" label="${tool.name} on ${on_string}"> 201 <collection name="list_output_fasta" type="list" label="${tool.name} on ${on_string}: fasta">
202 <discover_datasets pattern="__name__" directory="out" visible="false" format="fasta"/> 202 <discover_datasets pattern="__name__" directory="out" visible="false" format="fasta"/>
203 <filter>split_parms['select_ftype'] == "fasta"</filter> 203 <filter>split_parms['select_ftype'] == "fasta"</filter>
204 </collection> 204 </collection>
205 <collection name="list_output_fastq" type="list" label="${tool.name} on ${on_string}"> 205 <collection name="list_output_fastq" type="list" label="${tool.name} on ${on_string}: fastq">
206 <discover_datasets pattern="__name__" directory="out" visible="false" format="fastq"/> 206 <discover_datasets pattern="__name__" directory="out" visible="false" format="fastq"/>
207 <filter>split_parms['select_ftype'] == "fastq"</filter> 207 <filter>split_parms['select_ftype'] == "fastq"</filter>
208 </collection> 208 </collection>
209 <collection name="list_output_sdf" type="list" label="${tool.name} on ${on_string}"> 209 <collection name="list_output_sdf" type="list" label="${tool.name} on ${on_string}: sdf">
210 <discover_datasets pattern="__name__" directory="out" visible="false" format="sdf"/> 210 <discover_datasets pattern="__name__" directory="out" visible="false" format="sdf"/>
211 <filter>split_parms['select_ftype'] == "sdf"</filter> 211 <filter>split_parms['select_ftype'] == "sdf"</filter>
212 </collection> 212 </collection>
213 <collection name="list_output_txt" type="list" label="${tool.name} on ${on_string}"> 213 <collection name="list_output_txt" type="list" label="${tool.name} on ${on_string}: txt">
214 <discover_datasets pattern="__name__" directory="out" visible="false" format="txt"/> 214 <discover_datasets pattern="__name__" directory="out" visible="false" format="txt"/>
215 <filter>split_parms['select_ftype'] == "txt"</filter> 215 <filter>split_parms['select_ftype'] == "txt"</filter>
216 </collection> 216 </collection>
217 <collection name="list_output_generic" type="list" label="${tool.name} on ${on_string}"> 217 <collection name="list_output_generic" type="list" label="${tool.name} on ${on_string}: generic">
218 <discover_datasets pattern="__name_and_ext__" directory="out" visible="false"/> 218 <discover_datasets pattern="__name_and_ext__" directory="out" visible="false"/>
219 <filter>split_parms['select_ftype'] == "generic"</filter> 219 <filter>split_parms['select_ftype'] == "generic"</filter>
220 </collection> 220 </collection>
221 </outputs> 221 </outputs>
222 <tests> 222 <tests>
223 <!-- 1 --> 223 <!-- 1 -->
224 <test> 224 <test expect_num_outputs="1">
225 <param name="input" value="test.tabular" ftype="tabular"/> 225 <param name="input" value="test.tabular" ftype="tabular"/>
226 <param name="select_ftype" value="tabular"/> 226 <param name="select_ftype" value="tabular"/>
227 <param name="select_split_by" value="col"/> 227 <param name="select_split_by" value="col"/>
228 <param name="id_col" value="1"/> 228 <param name="id_col" value="1"/>
229 <param name="match_regex" value="(.*)\.mgf"/> 229 <param name="match_regex" value="(.*)\.mgf"/>
234 <element name="foo2.tab" file="foo2.tab" ftype="tabular"/> 234 <element name="foo2.tab" file="foo2.tab" ftype="tabular"/>
235 <element name="foo3.tab" file="foo3.tab" ftype="tabular"/> 235 <element name="foo3.tab" file="foo3.tab" ftype="tabular"/>
236 </output_collection> 236 </output_collection>
237 </test> 237 </test>
238 <!-- 2 --> 238 <!-- 2 -->
239 <test> 239 <test expect_num_outputs="1">
240 <param name="input" value="test.tabular" ftype="tabular"/> 240 <param name="input" value="test.tabular" ftype="tabular"/>
241 <param name="select_ftype" value="tabular"/> 241 <param name="select_ftype" value="tabular"/>
242 <param name="select_split_by" value="row"/> 242 <param name="select_split_by" value="row"/>
243 <param name="top" value="2"/> 243 <param name="top" value="2"/>
244 <param name="mode" value="numnew"/> 244 <param name="mode" value="numnew"/>
248 <element name="test_000000.tabular" file="test_0.tabular" ftype="tabular"/> 248 <element name="test_000000.tabular" file="test_0.tabular" ftype="tabular"/>
249 <element name="test_000001.tabular" file="test_1.tabular" ftype="tabular"/> 249 <element name="test_000001.tabular" file="test_1.tabular" ftype="tabular"/>
250 </output_collection> 250 </output_collection>
251 </test> 251 </test>
252 <!-- 3 --> 252 <!-- 3 -->
253 <test> 253 <test expect_num_outputs="1">
254 <param name="input" value="test.tabular" ftype="tabular"/> 254 <param name="input" value="test.tabular" ftype="tabular"/>
255 <param name="select_ftype" value="tabular"/> 255 <param name="select_ftype" value="tabular"/>
256 <param name="select_split_by" value="row"/> 256 <param name="select_split_by" value="row"/>
257 <param name="top" value="2"/> 257 <param name="top" value="2"/>
258 <param name="mode" value="numnew"/> 258 <param name="mode" value="numnew"/>
263 <element name="batch_tab_000000.tabular" file="batch_tab_0.tabular" ftype="tabular"/> 263 <element name="batch_tab_000000.tabular" file="batch_tab_0.tabular" ftype="tabular"/>
264 <element name="batch_tab_000001.tabular" file="batch_tab_1.tabular" ftype="tabular"/> 264 <element name="batch_tab_000001.tabular" file="batch_tab_1.tabular" ftype="tabular"/>
265 </output_collection> 265 </output_collection>
266 </test> 266 </test>
267 <!-- 4 --> 267 <!-- 4 -->
268 <test> 268 <test expect_num_outputs="1">
269 <param name="input" value="test.tabular" ftype="tabular"/> 269 <param name="input" value="test.tabular" ftype="tabular"/>
270 <param name="select_ftype" value="tabular"/> 270 <param name="select_ftype" value="tabular"/>
271 <param name="select_split_by" value="row"/> 271 <param name="select_split_by" value="row"/>
272 <param name="top" value="2"/> 272 <param name="top" value="2"/>
273 <param name="mode" value="chunk"/> 273 <param name="mode" value="chunk"/>
278 <element name="batch_tab_000000.tabular" file="batch_tab_0.tabular" ftype="tabular"/> 278 <element name="batch_tab_000000.tabular" file="batch_tab_0.tabular" ftype="tabular"/>
279 <element name="batch_tab_000001.tabular" file="batch_tab_1.tabular" ftype="tabular"/> 279 <element name="batch_tab_000001.tabular" file="batch_tab_1.tabular" ftype="tabular"/>
280 </output_collection> 280 </output_collection>
281 </test> 281 </test>
282 <!-- 5 --> 282 <!-- 5 -->
283 <test> 283 <test expect_num_outputs="1">
284 <param name="select_ftype" value="txt"/> 284 <param name="select_ftype" value="txt"/>
285 <param name="input" value="karyotype.txt" ftype="txt"/> 285 <param name="input" value="karyotype.txt" ftype="txt"/>
286 <param name="mode" value="numnew"/> 286 <param name="mode" value="numnew"/>
287 <param name="numnew" value="24"/> 287 <param name="numnew" value="24"/>
288 <param name="newfilenames" value="chr"/> 288 <param name="newfilenames" value="chr"/>
314 <element name="chr_000022.txt" file="chr_000022.txt" ftype="txt"/> 314 <element name="chr_000022.txt" file="chr_000022.txt" ftype="txt"/>
315 <element name="chr_000023.txt" file="chr_000023.txt" ftype="txt"/> 315 <element name="chr_000023.txt" file="chr_000023.txt" ftype="txt"/>
316 </output_collection> 316 </output_collection>
317 </test> 317 </test>
318 <!-- 6 --> 318 <!-- 6 -->
319 <test> 319 <test expect_num_outputs="1">
320 <param name="input" value="psm.tabular" ftype="tabular"/> 320 <param name="input" value="psm.tabular" ftype="tabular"/>
321 <param name="select_ftype" value="tabular"/> 321 <param name="select_ftype" value="tabular"/>
322 <param name="select_split_by" value="col"/> 322 <param name="select_split_by" value="col"/>
323 <param name="id_col" value="10"/> 323 <param name="id_col" value="10"/>
324 <param name="match_regex" value="(.*)\.mgf"/> 324 <param name="match_regex" value="(.*)\.mgf"/>
330 <element name="file3.tab" file="file3.tab" ftype="tabular"/> 330 <element name="file3.tab" file="file3.tab" ftype="tabular"/>
331 <element name="file4.tab" file="file4.tab" ftype="tabular"/> 331 <element name="file4.tab" file="file4.tab" ftype="tabular"/>
332 </output_collection> 332 </output_collection>
333 </test> 333 </test>
334 <!-- 7 splitting of mgf --> 334 <!-- 7 splitting of mgf -->
335 <test> 335 <test expect_num_outputs="1">
336 <param name="input" value="demo758Dacentroid.mgf" ftype="mgf"/> 336 <param name="input" value="demo758Dacentroid.mgf" ftype="mgf"/>
337 <param name="select_ftype" value="mgf"/> 337 <param name="select_ftype" value="mgf"/>
338 <param name="mode" value="numnew"/> 338 <param name="mode" value="numnew"/>
339 <param name="numnew" value="3"/> 339 <param name="numnew" value="3"/>
340 <param name="newfilenames" value="demo"/> 340 <param name="newfilenames" value="demo"/>
343 <element name="demo_000001.mgf" file="demo_1.mgf" ftype="mgf"/> 343 <element name="demo_000001.mgf" file="demo_1.mgf" ftype="mgf"/>
344 <element name="demo_000002.mgf" file="demo_2.mgf" ftype="mgf"/> 344 <element name="demo_000002.mgf" file="demo_2.mgf" ftype="mgf"/>
345 </output_collection> 345 </output_collection>
346 </test> 346 </test>
347 <!-- 8 splitting of fasta + desired number of files--> 347 <!-- 8 splitting of fasta + desired number of files-->
348 <test> 348 <test expect_num_outputs="1">
349 <param name="input" value="test.fasta" ftype="fasta"/> 349 <param name="input" value="test.fasta" ftype="fasta"/>
350 <param name="select_ftype" value="fasta"/> 350 <param name="select_ftype" value="fasta"/>
351 <param name="mode" value="numnew"/> 351 <param name="mode" value="numnew"/>
352 <param name="numnew" value="2"/> 352 <param name="numnew" value="2"/>
353 <param name="newfilenames" value="test"/> 353 <param name="newfilenames" value="test"/>
355 <element name="test_000000.fasta" file="test_0.fasta" ftype="fasta"/> 355 <element name="test_000000.fasta" file="test_0.fasta" ftype="fasta"/>
356 <element name="test_000001.fasta" file="test_1.fasta" ftype="fasta"/> 356 <element name="test_000001.fasta" file="test_1.fasta" ftype="fasta"/>
357 </output_collection> 357 </output_collection>
358 </test> 358 </test>
359 <!-- 9 splitting of fasta + desired chunksize --> 359 <!-- 9 splitting of fasta + desired chunksize -->
360 <test> 360 <test expect_num_outputs="1">
361 <param name="input" value="test.fasta" ftype="fasta"/> 361 <param name="input" value="test.fasta" ftype="fasta"/>
362 <param name="select_ftype" value="fasta"/> 362 <param name="select_ftype" value="fasta"/>
363 <param name="mode" value="chunk"/> 363 <param name="mode" value="chunk"/>
364 <param name="chunksize" value="3"/> 364 <param name="chunksize" value="3"/>
365 <param name="newfilenames" value="test"/> 365 <param name="newfilenames" value="test"/>
367 <element name="test_000000.fasta" file="test_0.fasta" ftype="fasta"/> 367 <element name="test_000000.fasta" file="test_0.fasta" ftype="fasta"/>
368 <element name="test_000001.fasta" file="test_1.fasta" ftype="fasta"/> 368 <element name="test_000001.fasta" file="test_1.fasta" ftype="fasta"/>
369 </output_collection> 369 </output_collection>
370 </test> 370 </test>
371 <!-- 10 splitting of fastq, specify desired number of files --> 371 <!-- 10 splitting of fastq, specify desired number of files -->
372 <test> 372 <test expect_num_outputs="1">
373 <param name="input" value="test.fastq" ftype="fastq"/> 373 <param name="input" value="test.fastq" ftype="fastq"/>
374 <param name="select_ftype" value="fastq"/> 374 <param name="select_ftype" value="fastq"/>
375 <param name="mode" value="numnew"/> 375 <param name="mode" value="numnew"/>
376 <param name="numnew" value="2"/> 376 <param name="numnew" value="2"/>
377 <param name="newfilenames" value="test"/> 377 <param name="newfilenames" value="test"/>
381 </output_collection> 381 </output_collection>
382 </test> 382 </test>
383 <!-- 11 splitting of fastq, specify desired number of files 383 <!-- 11 splitting of fastq, specify desired number of files
384 same as previous test, but by specifying the number of lines per record 384 same as previous test, but by specifying the number of lines per record
385 explicitely (not using the preset of the python script) --> 385 explicitely (not using the preset of the python script) -->
386 <test> 386 <test expect_num_outputs="1">
387 <param name="input" value="test.fastq" ftype="fastq"/> 387 <param name="input" value="test.fastq" ftype="fastq"/>
388 <param name="select_ftype" value="generic"/> 388 <param name="select_ftype" value="generic"/>
389 <param name="select_split_method" value="number"/> 389 <param name="select_split_method" value="number"/>
390 <param name="record_length" value="4"/> 390 <param name="record_length" value="4"/>
391 <param name="mode" value="numnew"/> 391 <param name="mode" value="numnew"/>
395 <element name="test_000000" file="test_0.fastq" ftype="fastq"/> 395 <element name="test_000000" file="test_0.fastq" ftype="fastq"/>
396 <element name="test_000001" file="test_1.fastq" ftype="fastq"/> 396 <element name="test_000001" file="test_1.fastq" ftype="fastq"/>
397 </output_collection> 397 </output_collection>
398 </test> 398 </test>
399 <!-- splitting of fasta w random assignment and specific filename prefix --> 399 <!-- splitting of fasta w random assignment and specific filename prefix -->
400 <test> 400 <test expect_num_outputs="1">
401 <param name="input" value="test.fasta" ftype="fasta"/> 401 <param name="input" value="test.fasta" ftype="fasta"/>
402 <param name="select_ftype" value="fasta"/> 402 <param name="select_ftype" value="fasta"/>
403 <param name="mode" value="numnew"/> 403 <param name="mode" value="numnew"/>
404 <param name="numnew" value="2"/> 404 <param name="numnew" value="2"/>
405 <param name="newfilenames" value="rand"/> 405 <param name="newfilenames" value="rand"/>
409 <element name="rand_000000.fasta" file="rand_0.fasta" ftype="fasta"/> 409 <element name="rand_000000.fasta" file="rand_0.fasta" ftype="fasta"/>
410 <element name="rand_000001.fasta" file="rand_1.fasta" ftype="fasta"/> 410 <element name="rand_000001.fasta" file="rand_1.fasta" ftype="fasta"/>
411 </output_collection> 411 </output_collection>
412 </test> 412 </test>
413 <!-- splitting of fasta w batch assignment and specific filename prefix --> 413 <!-- splitting of fasta w batch assignment and specific filename prefix -->
414 <test> 414 <test expect_num_outputs="1">
415 <param name="input" value="test.fasta" ftype="fasta"/> 415 <param name="input" value="test.fasta" ftype="fasta"/>
416 <param name="select_ftype" value="fasta"/> 416 <param name="select_ftype" value="fasta"/>
417 <param name="mode" value="numnew"/> 417 <param name="mode" value="numnew"/>
418 <param name="numnew" value="2"/> 418 <param name="numnew" value="2"/>
419 <param name="newfilenames" value="fasta_batch"/> 419 <param name="newfilenames" value="fasta_batch"/>
422 <element name="fasta_batch_000000.fasta" file="fasta_batch_0.fasta" ftype="fasta"/> 422 <element name="fasta_batch_000000.fasta" file="fasta_batch_0.fasta" ftype="fasta"/>
423 <element name="fasta_batch_000001.fasta" file="fasta_batch_1.fasta" ftype="fasta"/> 423 <element name="fasta_batch_000001.fasta" file="fasta_batch_1.fasta" ftype="fasta"/>
424 </output_collection> 424 </output_collection>
425 </test> 425 </test>
426 <!-- splitting of txt w default (alternating assignment) --> 426 <!-- splitting of txt w default (alternating assignment) -->
427 <test> 427 <test expect_num_outputs="1">
428 <param name="input" value="test.tabular" ftype="txt"/> 428 <param name="input" value="test.tabular" ftype="txt"/>
429 <param name="select_ftype" value="txt"/> 429 <param name="select_ftype" value="txt"/>
430 <param name="mode" value="numnew"/> 430 <param name="mode" value="numnew"/>
431 <param name="numnew" value="2"/> 431 <param name="numnew" value="2"/>
432 <param name="newfilenames" value="test"/> 432 <param name="newfilenames" value="test"/>
434 <element name="test_000000.txt" file="test_0.tabular" ftype="txt" lines_diff="1"/> 434 <element name="test_000000.txt" file="test_0.tabular" ftype="txt" lines_diff="1"/>
435 <element name="test_000001.txt" file="test_1.tabular" ftype="txt" lines_diff="1"/> 435 <element name="test_000001.txt" file="test_1.tabular" ftype="txt" lines_diff="1"/>
436 </output_collection> 436 </output_collection>
437 </test> 437 </test>
438 <!-- generic-regex splitting (of txt) w default assignement (alternating) --> 438 <!-- generic-regex splitting (of txt) w default assignement (alternating) -->
439 <test> 439 <test expect_num_outputs="1">
440 <param name="input" value="test.tabular" ftype="txt"/> 440 <param name="input" value="test.tabular" ftype="txt"/>
441 <param name="select_ftype" value="generic"/> 441 <param name="select_ftype" value="generic"/>
442 <param name="select_split_method" value="regex"/> 442 <param name="select_split_method" value="regex"/>
443 <param name="generic_regex" value="^.*"/> 443 <param name="generic_regex" value="^.*"/>
444 <param name="mode" value="numnew"/> 444 <param name="mode" value="numnew"/>
448 <element name="test_000000" file="test_0.tabular" ftype="txt" lines_diff="1"/> 448 <element name="test_000000" file="test_0.tabular" ftype="txt" lines_diff="1"/>
449 <element name="test_000001" file="test_1.tabular" ftype="txt" lines_diff="1"/> 449 <element name="test_000001" file="test_1.tabular" ftype="txt" lines_diff="1"/>
450 </output_collection> 450 </output_collection>
451 </test> 451 </test>
452 <!-- generic-regex splitting (of a fasta) w random assignment --> 452 <!-- generic-regex splitting (of a fasta) w random assignment -->
453 <test> 453 <test expect_num_outputs="1">
454 <param name="input" value="test.fasta" ftype="fasta"/> 454 <param name="input" value="test.fasta" ftype="fasta"/>
455 <param name="select_ftype" value="generic"/> 455 <param name="select_ftype" value="generic"/>
456 <param name="select_split_method" value="regex"/> 456 <param name="select_split_method" value="regex"/>
457 <param name="generic_regex" value="^>.*"/> 457 <param name="generic_regex" value="^>.*"/>
458 <param name="mode" value="numnew"/> 458 <param name="mode" value="numnew"/>
464 <element name="rand_000000" file="rand_0.fasta" ftype="fasta"/> 464 <element name="rand_000000" file="rand_0.fasta" ftype="fasta"/>
465 <element name="rand_000001" file="rand_1.fasta" ftype="fasta"/> 465 <element name="rand_000001" file="rand_1.fasta" ftype="fasta"/>
466 </output_collection> 466 </output_collection>
467 </test> 467 </test>
468 <!-- sdf + specify desired number of files --> 468 <!-- sdf + specify desired number of files -->
469 <test> 469 <test expect_num_outputs="1">
470 <param name="input" value="3_molecules.sdf" ftype="sdf"/> 470 <param name="input" value="3_molecules.sdf" ftype="sdf"/>
471 <param name="select_ftype" value="sdf"/> 471 <param name="select_ftype" value="sdf"/>
472 <param name="mode" value="numnew"/> 472 <param name="mode" value="numnew"/>
473 <param name="numnew" value="10"/> 473 <param name="numnew" value="10"/>
474 <param name="newfilenames" value="mol"/> 474 <param name="newfilenames" value="mol"/>
478 <element name="mol_000001.sdf" file="mol_1.sdf" ftype="sdf"/> 478 <element name="mol_000001.sdf" file="mol_1.sdf" ftype="sdf"/>
479 <element name="mol_000002.sdf" file="mol_2.sdf" ftype="sdf"/> 479 <element name="mol_000002.sdf" file="mol_2.sdf" ftype="sdf"/>
480 </output_collection> 480 </output_collection>
481 </test> 481 </test>
482 <!-- sdf + specify desired number of records per file (chunksize) --> 482 <!-- sdf + specify desired number of records per file (chunksize) -->
483 <test> 483 <test expect_num_outputs="1">
484 <param name="input" value="3_molecules.sdf" ftype="sdf"/> 484 <param name="input" value="3_molecules.sdf" ftype="sdf"/>
485 <param name="select_ftype" value="sdf"/> 485 <param name="select_ftype" value="sdf"/>
486 <param name="mode" value="chunk"/> 486 <param name="mode" value="chunk"/>
487 <param name="chunksize" value="1"/> 487 <param name="chunksize" value="1"/>
488 <param name="newfilenames" value="mol"/> 488 <param name="newfilenames" value="mol"/>
492 <element name="mol_000001.sdf" file="mol_1.sdf" ftype="sdf"/> 492 <element name="mol_000001.sdf" file="mol_1.sdf" ftype="sdf"/>
493 <element name="mol_000002.sdf" file="mol_2.sdf" ftype="sdf"/> 493 <element name="mol_000002.sdf" file="mol_2.sdf" ftype="sdf"/>
494 </output_collection> 494 </output_collection>
495 </test> 495 </test>
496 <!-- test split_after (by splitting fasta files after non-header lines) --> 496 <!-- test split_after (by splitting fasta files after non-header lines) -->
497 <test> 497 <test expect_num_outputs="1">
498 <param name="input" value="test.fasta" ftype="fasta"/> 498 <param name="input" value="test.fasta" ftype="fasta"/>
499 <param name="select_ftype" value="generic"/> 499 <param name="select_ftype" value="generic"/>
500 <param name="select_split_method" value="regex"/> 500 <param name="select_split_method" value="regex"/>
501 <param name="generic_regex" value="^[^>].*"/> 501 <param name="generic_regex" value="^[^>].*"/>
502 <param name="split_after" value="true"/> 502 <param name="split_after" value="true"/>
506 <param name="allocate" value="random"/> 506 <param name="allocate" value="random"/>
507 <param name="seed" value="1010"/> 507 <param name="seed" value="1010"/>
508 <output_collection name="list_output_generic" type="list"> 508 <output_collection name="list_output_generic" type="list">
509 <element name="rand_000000" file="rand_0.fasta" ftype="fasta"/> 509 <element name="rand_000000" file="rand_0.fasta" ftype="fasta"/>
510 <element name="rand_000001" file="rand_1.fasta" ftype="fasta"/> 510 <element name="rand_000001" file="rand_1.fasta" ftype="fasta"/>
511 </output_collection>
512 </test>
513 <test expect_num_outputs="1">
514 <param name="input" value="test.tabular" ftype="tabular"/>
515 <param name="select_ftype" value="tabular"/>
516 <param name="select_split_by" value="row"/>
517 <param name="top" value="2"/>
518 <param name="mode" value="chunk"/>
519 <param name="chunksize" value="1"/>
520 <param name="allocate" value="batch"/>
521 <output_collection name="list_output_tab" type="list">
522 <element name="split_file_000000.tabular" file="split_file_0.tabular" ftype="tabular"/>
523 <element name="split_file_000001.tabular" file="split_file_1.tabular" ftype="tabular"/>
524 <element name="split_file_000002.tabular" file="split_file_2.tabular" ftype="tabular"/>
525 <element name="split_file_000003.tabular" file="split_file_3.tabular" ftype="tabular"/>
511 </output_collection> 526 </output_collection>
512 </test> 527 </test>
513 </tests> 528 </tests>
514 <help><![CDATA[ 529 <help><![CDATA[
515 **Split file into a dataset collection** 530 **Split file into a dataset collection**