# HG changeset patch
# User bgruening
# Date 1495436481 14400
# Node ID fc8d71a0fb9b2dce41061534f8553c3e761fb513
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/silicos-it/strip-it commit c30f4f5b484d97e8a12d0cb968abeeeafca750d7
diff -r 000000000000 -r fc8d71a0fb9b strip-it.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/strip-it.xml Mon May 22 03:01:21 2017 -0400
@@ -0,0 +1,102 @@
+
+ extracts predefined scaffolds from molecules
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+
+ strip_it
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diff -r 000000000000 -r fc8d71a0fb9b test-data/CID_3037.sdf
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/CID_3037.sdf Mon May 22 03:01:21 2017 -0400
@@ -0,0 +1,220 @@
+3037
+ -OEChem-08231108593D
+
+ 27 28 0 0 0 0 0 0 0999 V2000
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+ -0.1809 -2.1668 -0.3789 O 0 0 0 0 0 0 0 0 0 0 0 0
+ 0.1788 2.1664 -0.3787 O 0 0 0 0 0 0 0 0 0 0 0 0
+ -0.0011 -0.0002 1.4744 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -1.2222 -0.2738 0.6597 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 1.2377 0.2772 0.6480 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -1.2586 -1.3462 -0.2316 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 1.2565 1.3457 -0.2314 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.3343 0.5568 0.7972 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 2.3322 -0.5574 0.7972 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.4069 -1.5879 -0.9855 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 2.4048 1.5875 -0.9852 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -3.4827 0.3152 0.0433 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 3.4807 -0.3156 0.0435 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -3.5190 -0.7571 -0.8481 C 0 0 0 0 0 0 0 0 0 0 0 0
+ 3.5170 0.7568 -0.8478 C 0 0 0 0 0 0 0 0 0 0 0 0
+ -0.1548 0.8649 2.1342 H 0 0 0 0 0 0 0 0 0 0 0 0
+ 0.1601 -0.8435 2.1593 H 0 0 0 0 0 0 0 0 0 0 0 0
+ -2.3089 1.3938 1.4913 H 0 0 0 0 0 0 0 0 0 0 0 0
+ 2.3053 -1.3909 1.4943 H 0 0 0 0 0 0 0 0 0 0 0 0
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+ -4.4070 -0.9574 -1.4422 H 0 0 0 0 0 0 0 0 0 0 0 0
+ 4.4050 0.9570 -1.4418 H 0 0 0 0 0 0 0 0 0 0 0 0
+ 0.2961 -2.2262 0.4641 H 0 0 0 0 0 0 0 0 0 0 0 0
+ 0.3872 2.8487 -1.0397 H 0 0 0 0 0 0 0 0 0 0 0 0
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+M END
+>
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+1 3 donor
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+>
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+$$$$
+
diff -r 000000000000 -r fc8d71a0fb9b test-data/Strip-it_on_CID3037.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Strip-it_on_CID3037.tabular Mon May 22 03:01:21 2017 -0400
@@ -0,0 +1,2 @@
+NAME MOLECULE RINGS_WITH_LINKERS_1 RINGS_WITH_LINKERS_2 MURCKO_1 MURCKO_2 OPREA_1 OPREA_2 OPREA_3 SCHUFFENHAUER_1 SCHUFFENHAUER_2 SCHUFFENHAUER_3 SCHUFFENHAUER_4 SCHUFFENHAUER_5
+3037 Oc1ccc(cc1Cc1cc(Cl)ccc1O)Cl c1ccc(cc1)Cc1ccccc1 c1ccc(cc1)Cc1ccccc1 C1CCC(CC1)CC1CCCCC1 C1CCC(CC1)C1CCCCC1 C1CC1C1CC1 C1CC1C1CC1 C1CC1C1CC1 c1ccccc1 c1ccc(cc1)Cc1ccccc1 c1ccc(cc1)Cc1ccccc1 c1ccc(cc1)Cc1ccccc1 c1ccc(cc1)Cc1ccccc1