Mercurial > repos > bgruening > text_processing
annotate head.xml @ 9:6378f8384f30 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5d3a6a822897569f22f288589543562f54482418
| author | bgruening |
|---|---|
| date | Fri, 01 Dec 2017 13:47:28 -0500 |
| parents | 60edf2f8c28f |
| children | 12615d397df7 |
| rev | line source |
|---|---|
| 0 | 1 <tool id="tp_head_tool" name="Select first" version="@BASE_VERSION@.0"> |
| 2 <description>lines from a dataset (head)</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <version_command>head --version | head -n 1</version_command> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 head | |
| 11 --lines | |
| 12 $complement$count | |
| 13 '${infile}' | |
| 14 > '${outfile}' | |
| 15 ]]> | |
| 16 </command> | |
| 17 <inputs> | |
| 18 <param name="infile" type="data" format="txt" label="File to select" /> | |
| 19 <param name="complement" type="select" label="Operation"> | |
| 20 <option value="">Keep first lines</option> | |
| 21 <option value="-">Remove last lines</option> | |
| 22 </param> | |
|
3
37e1eb05b1b4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
0
diff
changeset
|
23 <param name="count" type="integer" value="10" |
| 0 | 24 label="Number of lines" help="These will be kept/discarded depending on 'operation'. (--lines)" /> |
| 25 </inputs> | |
| 26 <outputs> | |
| 27 <data name="outfile" format_source="infile" metadata_source="infile"/> | |
| 28 </outputs> | |
| 29 <tests> | |
| 30 <test> | |
| 31 <param name="count" value="10"/> | |
| 32 <param name="infile" value="1.bed"/> | |
| 33 <output name="outfile" file="head_results1.bed"/> | |
| 34 </test> | |
| 35 </tests> | |
| 36 <help> | |
| 37 <![CDATA[ | |
| 38 **What it does** | |
| 39 | |
| 40 This tool outputs specified number of lines from the **beginning** of a dataset | |
| 41 | |
| 42 ----- | |
| 43 | |
| 44 **Example** | |
| 45 | |
| 46 Selecting 2 lines from this:: | |
| 47 | |
| 48 chr7 56632 56652 D17003_CTCF_R6 310 + | |
| 49 chr7 56736 56756 D17003_CTCF_R7 354 + | |
| 50 chr7 56761 56781 D17003_CTCF_R4 220 + | |
| 51 chr7 56772 56792 D17003_CTCF_R7 372 + | |
| 52 chr7 56775 56795 D17003_CTCF_R4 207 + | |
| 53 | |
| 54 will produce:: | |
| 55 | |
| 56 chr7 56632 56652 D17003_CTCF_R6 310 + | |
| 57 chr7 56736 56756 D17003_CTCF_R7 354 + | |
| 58 | |
| 59 @REFERENCES@ | |
| 60 ]]> | |
| 61 </help> | |
|
6
60edf2f8c28f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n'
bgruening
parents:
3
diff
changeset
|
62 <expand macro="citations" /> |
| 0 | 63 </tool> |