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comparison find_and_replace.xml @ 13:0a8c6b61f0f4 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4f79443517baf378fbfe1f81be361d97f2938601
author bgruening
date Wed, 03 Apr 2019 13:56:01 -0400
parents 01ca80da2266
children fb4ff3c42cd3
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12:a6f147a050a2 13:0a8c6b61f0f4
1 <tool id="tp_find_and_replace" name="Replace" version="@BASE_VERSION@.1"> 1 <tool id="tp_find_and_replace" name="Replace" version="@BASE_VERSION@.2">
2 <description>parts of text</description> 2 <description>parts of text</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
11 perl '$__tool_directory__/find_and_replace' 11 perl '$__tool_directory__/find_and_replace'
12 #if $searchwhere.searchwhere_select == "column": 12 #if $searchwhere.searchwhere_select == "column":
13 -c $searchwhere.column 13 -c $searchwhere.column
14 #end if 14 #end if
15 -o $outfile 15 -o $outfile
16 $global
16 $caseinsensitive 17 $caseinsensitive
17 $wholewords 18 $wholewords
18 $skip_first_line 19 $skip_first_line
19 $is_regex 20 $is_regex
20 '$find_pattern' 21 '$find_pattern'
39 </valid> 40 </valid>
40 </sanitizer> 41 </sanitizer>
41 </param> 42 </param>
42 <param name="is_regex" type="boolean" checked="false" truevalue="-r" falsevalue="" 43 <param name="is_regex" type="boolean" checked="false" truevalue="-r" falsevalue=""
43 label="Find-Pattern is a regular expression" help="see help section for details." /> 44 label="Find-Pattern is a regular expression" help="see help section for details." />
45
46 <param name="global" type="boolean" checked="false" truevalue="-g" falsevalue=""
47 label="Replace all occurences of the pattern" />
44 48
45 <param name="caseinsensitive" type="boolean" checked="false" truevalue="-i" falsevalue="" 49 <param name="caseinsensitive" type="boolean" checked="false" truevalue="-i" falsevalue=""
46 label="Case-Insensitive search" help="" /> 50 label="Case-Insensitive search" help="" />
47 51
48 <param name="wholewords" type="boolean" checked="false" truevalue="-w" falsevalue="" 52 <param name="wholewords" type="boolean" checked="false" truevalue="-w" falsevalue=""
69 <test> 73 <test>
70 <param name="infile" value="find_and_replace1.txt" /> 74 <param name="infile" value="find_and_replace1.txt" />
71 <param name="find_pattern" value="day" /> 75 <param name="find_pattern" value="day" />
72 <param name="replace_pattern" value="great day" /> 76 <param name="replace_pattern" value="great day" />
73 <param name="is_regex" value="False" /> 77 <param name="is_regex" value="False" />
78 <param name="global" value="true" />
74 <param name="caseinsensitive" value="False" /> 79 <param name="caseinsensitive" value="False" />
75 <param name="wholewords" value="True" /> 80 <param name="wholewords" value="True" />
76 <output name="outfile" file="find_and_replace_results1.txt" /> 81 <output name="outfile" file="find_and_replace_results1.txt" />
77 </test> 82 </test>
78 <test> 83 <test>