Mercurial > repos > bgruening > text_processing

comparison awk.xml @ 5:20344ce0c811 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52
author bgruening
date Wed, 23 Nov 2016 15:56:41 -0500
parents 5314e5d6f040
children 60edf2f8c28f
comparison
equal deleted inserted replaced
4:288462ec2630 5:20344ce0c811
1 <tool id="tp_awk_tool" name="Text reformatting" version="@BASE_VERSION@.0"> 1 <tool id="tp_awk_tool" name="Text reformatting" version="@BASE_VERSION@.0">
2 <description>with awk</description> 2 <description>with awk</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <requirements>
7 <requirement type="package" version="4.1.0">gnu_awk</requirement> 7 <requirement type="package" version="4.1.3">gawk</requirement>
8 </expand> 8 </requirements>
9 <version_command>awk --version | head -n 1</version_command> 9 <version_command>awk --version | head -n 1</version_command>
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 awk 12 awk
13 --sandbox 13 --sandbox
17 -f "$awk_script" 17 -f "$awk_script"
18 "$infile" 18 "$infile"
19 > "$outfile" 19 > "$outfile"
20 ]]> 20 ]]>
21 </command> 21 </command>
22 <configfiles>
23 <configfile name="awk_script">$code</configfile>
24 </configfiles>
22 <inputs> 25 <inputs>
23 <param name="infile" format="txt" type="data" label="File to process" /> 26 <param name="infile" format="txt" type="data" label="File to process" />
24 <param name="code" type="text" area="true" size="5x35" label="AWK Program" help=""> 27 <param name="code" type="text" area="true" size="5x35" label="AWK Program" help="">
25 <sanitizer> 28 <sanitizer>
26 <valid initial="string.printable"> 29 <valid initial="string.printable">
27 <remove value="&apos;"/> 30 <remove value="&apos;"/>
28 </valid> 31 </valid>
29 </sanitizer> 32 </sanitizer>
30 </param> 33 </param>
31 </inputs> 34 </inputs>
32 <configfiles>
33 <configfile name="awk_script">$code</configfile>
34 </configfiles>
35 <outputs> 35 <outputs>
36 <data name="outfile" format_source="infile" metadata_source="infile"/> 36 <data name="outfile" format_source="infile" metadata_source="infile"/>
37 </outputs> 37 </outputs>
38 <tests> 38 <tests>
39 <test> 39 <test>
59 59
60 **Further reading** 60 **Further reading**
61 61
62 - Awk by Example (http://www.ibm.com/developerworks/linux/library/l-awk1.html) 62 - Awk by Example (http://www.ibm.com/developerworks/linux/library/l-awk1.html)
63 - Long AWK tutorial (http://www.grymoire.com/Unix/Awk.html) 63 - Long AWK tutorial (http://www.grymoire.com/Unix/Awk.html)
64 - Learn AWK in 1 hour (http://www.selectorweb.com/awk.html)
65 - awk cheat-sheet (http://cbi.med.harvard.edu/people/peshkin/sb302/awk_cheatsheets.pdf)
66 - Collection of useful awk one-liners (http://student.northpark.edu/pemente/awk/awk1line.txt)
67 64
68 ----- 65 -----
69 66
70 **AWK programs** 67 **AWK programs**
71 68