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comparison unfold_column.py @ 3:37e1eb05b1b4 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
author bgruening
date Fri, 26 Feb 2016 12:22:19 -0500 (2016-02-26)
parents 5314e5d6f040
children f46f0e4f75c4
comparison
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2:616efa22d193 3:37e1eb05b1b4
2 2
3 import sys 3 import sys
4 4
5 out = open(sys.argv[4], 'w+') 5 out = open(sys.argv[4], 'w+')
6 6
7 sep = sys.argv[3]
8 # un-sanitize Galaxy inputs
9 if sep == 'X':
10 sep = ';'
11
7 with open(sys.argv[1]) as handle: 12 with open(sys.argv[1]) as handle:
8 for line in handle: 13 for line in handle:
9 cols = line.split('\t') 14 cols = line.split('\t')
10 unfolding_column = int(sys.argv[2]) - 1 15 unfolding_column = int(sys.argv[2]) - 1
11 column_content = cols[ unfolding_column ] 16 column_content = cols[ unfolding_column ]
12 for elem in column_content.split( sys.argv[3] ): 17 for elem in column_content.split( sep ):
13 out.write( '\t'.join( cols[:unfolding_column] + [elem] + cols[unfolding_column+1:]) ) 18 out.write( '\t'.join( cols[:unfolding_column] + [elem] + cols[unfolding_column+1:]) )
14 out.close() 19 out.close()