Mercurial > repos > bgruening > text_processing
diff grep.xml @ 22:3dc70b59608c draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 2dc2df988bd2dde9f8d7f629b594186dbd4fdc2b
| author | bgruening |
|---|---|
| date | Fri, 07 Mar 2025 20:44:20 +0000 |
| parents | fbf99087e067 |
| children |
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--- a/grep.xml Fri Aug 16 10:41:54 2024 +0000 +++ b/grep.xml Fri Mar 07 20:44:20 2025 +0000 @@ -85,7 +85,7 @@ <!-- grep a FASTA file for sequences with specific motif --> <test> <param name="infile" value="grep1.txt" /> - <param name="case_sensitive" value="case sensitive" /> + <param name="case_sensitive" value="-i" /> <param name="regex_type" value="-P" /> <param name="invert" value="" /> <param name="url_paste" value="AA.{2}GT" /> @@ -98,7 +98,7 @@ show highlighed output --> <test> <param name="infile" value="grep1.txt" /> - <param name="case_sensitive" value="case sensitive" /> + <param name="case_sensitive" value="-i" /> <param name="regex_type" value="-P" /> <param name="invert" value="" /> <param name="url_paste" value="AA.{2}GT" /> @@ -110,7 +110,7 @@ <!-- tests egrep --> <test> <param name="infile" value="egrep1.txt" /> - <param name="case_sensitive" value="case sensitive" /> + <param name="case_sensitive" value="-i" /> <param name="regex_type" value="-E" /> <param name="invert" value="" /> <param name="url_paste" value="[^ ]+" /> @@ -122,7 +122,7 @@ <!-- tests basic regex; + must be backslashed to match --> <test> <param name="infile" value="egrep1.txt" /> - <param name="case_sensitive" value="case sensitive" /> + <param name="case_sensitive" value="-i" /> <param name="regex_type" value="-G" /> <param name="invert" value="" /> <param name="url_paste" value="[^ ]\+" /> @@ -134,7 +134,7 @@ <!-- tests regex;matching nothing --> <test> <param name="infile" value="egrep1.txt" /> - <param name="case_sensitive" value="case sensitive" /> + <param name="case_sensitive" value="-i" /> <param name="regex_type" value="-G" /> <param name="invert" value="" /> <param name="url_paste" value="not existent pattern" /> @@ -150,7 +150,7 @@ <!-- tests invalid regex; i.e. that we still get exit code 2 --> <test expect_failure="true" expect_exit_code="2"> <param name="infile" value="egrep1.txt" /> - <param name="case_sensitive" value="case sensitive" /> + <param name="case_sensitive" value="-i" /> <param name="regex_type" value="-G" /> <param name="invert" value="" /> <param name="url_paste" value="\(" />