diff test-data/test_01.log @ 0:86fa46d3ce2e draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/tgsgapcloser commit dcc6bd722244004ed2d5ac49d53a4e1d71366b1a"
author bgruening
date Sun, 14 Nov 2021 21:28:36 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_01.log	Sun Nov 14 21:28:36 2021 +0000
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+/usr/local/bin/tgsgapcloserbin/tgsgapcloser --prefix output --contig2ont_paf output.fill.paf --ont_reads_a /tmp/tmp0waeaugc/files/f/4/4/dataset_f44c5ccd-786b-4085-ba86-9dea34a7c4b2.dat --min_match 300 --min_idy 0.300000
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	TGSGapCloser start now ... 
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	LoadONTReads start now ... 
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	LoadONTReads finish. used wall clock : 0 seconds, cpu time : 0.000380 seconds
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	LoadPAF start now ... 
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the read2contig freq is 
+1	9
+2	1
+
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the contig2read_num_freq freq is 
+1	2
+9	1
+
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the contig2a_read_freq freq is 
+1	9
+2	2
+
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	LoadPAF finish. used wall clock : 0 seconds, cpu time : 0.000138 seconds
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	LoadScaffInfo start now ... 
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	LoadScaffInfo finish. used wall clock : 0 seconds, cpu time : 0.000028 seconds
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	ParseAllGap start now ... 
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the overlap cheked caused failed is 0
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the gapsize cheked caused failed is 0
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the gap_total is 5
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the no_match is 4
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the no choose is 0
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the no common is 0
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the scaff_negotive_gap_size is 0
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the ont_negotive_gap_size is 0
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the common reads count freq for a gap 
+1	1
+
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the used idy freq is 
+41	1
+54	1
+
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the correct oo reads count freq for a gap 
+1	1
+
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the filler choose count freq for a gap 
+1	1
+
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the one read provide filler choose count freq for a gap 
+1	1
+
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	>the cut error is 0
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	ParseAllGap finish. used wall clock : 0 seconds, cpu time : 0.000165 seconds
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	PrintScaffInfo start now ... 
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	PrintScaffInfo finish. used wall clock : 0 seconds, cpu time : 0.000045 seconds
+TGSGapCloser	INFO	UTC	2021/11/14	19:39:45	:	TGSGapCloser finish. used wall clock : 0 seconds, cpu time : 0.000965 seconds