Mercurial > repos > bgruening > trim_galore

comparison trim_galore.xml @ 12:1bf4789584dc draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit e479633f5087a63dfdd19288f0f8a4e186980178
author bgruening
date Tue, 16 May 2017 09:34:00 -0400
parents 80cd83b11214
children b6c00b82f623
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11:80cd83b11214 12:1bf4789584dc
46 <requirement type="package" version="0.4.3">trim-galore</requirement> 46 <requirement type="package" version="0.4.3">trim-galore</requirement>
47 </requirements> 47 </requirements>
48 <version_command> 48 <version_command>
49 trim_galore --version 49 trim_galore --version
50 </version_command> 50 </version_command>
51 <command><![CDATA[ 51 <command detect_errors="exit_code"><![CDATA[
52 #set compressed = 'no' 52 #set compressed = 'no'
53 #if $singlePaired.sPaired == "single": 53 #if $singlePaired.sPaired == "single":
54 #if $singlePaired.input_singles.is_of_type("fastq.gz"): 54 #if $singlePaired.input_singles.is_of_type("fastq.gz"):
55 #set read1 = 'input_1.fastq.gz' 55 #set read1 = 'input_1.fastq.gz'
56 #set compressed = 'gz' 56 #set compressed = 'gz'