Mercurial > repos > bgruening > trim_galore
comparison test-data/sanger_full_range_report_results1.txt @ 4:2c1f0fe810f7 draft
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author | bgruening |
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date | Wed, 15 Apr 2015 11:32:11 -0400 |
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children | 11962ce40855 |
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3:eb546ac2aab2 | 4:2c1f0fe810f7 |
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2 SUMMARISING RUN PARAMETERS | |
3 ========================== | |
4 Input filename: ./input_singles | |
5 Trimming mode: single-end | |
6 Trim Galore version: 0.3.7 | |
7 Quality Phred score cutoff: 20 | |
8 Quality encoding type selected: ASCII+33 | |
9 Adapter sequence: 'AGATCGGAAGAGC' | |
10 Maximum trimming error rate: 0.1 (default) | |
11 Minimum required adapter overlap (stringency): 1 bp | |
12 Minimum required sequence length before a sequence gets removed: 20 bp | |
13 | |
14 | |
15 cutadapt version 1.1 | |
16 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_singles | |
17 Maximum error rate: 10.00% | |
18 Processed reads: 2 | |
19 Trimmed reads: 1 ( 50.0%) | |
20 Total basepairs: 168 (0.0 Mbp) | |
21 Trimmed basepairs: 1 (0.0 Mbp) (0.60% of total) | |
22 Too short reads: 0 ( 0.0% of processed reads) | |
23 Too long reads: 0 ( 0.0% of processed reads) | |
24 Total time: 0.00 s | |
25 Time per read: 0.32 ms | |
26 | |
27 === Adapter 1 === | |
28 | |
29 Adapter 'AGATCGGAAGAGC', length 13, was trimmed 1 times. | |
30 | |
31 Lengths of removed sequences | |
32 length count expected | |
33 1 1 0.5 | |
34 | |
35 | |
36 RUN STATISTICS FOR INPUT FILE: ./input_singles | |
37 ============================================= | |
38 2 sequences processed in total | |
39 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%) | |
40 |