Mercurial > repos > bgruening > trim_galore

comparison test-data/paired_collection_example_results3gz.txt @ 11:80cd83b11214 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 78bee2b2efd36fe9399ce574159fc007cb6bdfbf
author bgruening
date Mon, 24 Apr 2017 14:30:07 -0400
parents b4e39d993fc8
children 084bbd8ba7b8
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10:b4e39d993fc8 11:80cd83b11214
1 1
2 SUMMARISING RUN PARAMETERS 2 SUMMARISING RUN PARAMETERS
3 ========================== 3 ==========================
4 Input filename: input_1.fastq.gz 4 Input filename: input_1.fastq.gz
5 Trimming mode: paired-end 5 Trimming mode: paired-end
6 Trim Galore version: 0.4.0 6 Trim Galore version: 0.4.3
7 Cutadapt version: 1.8 7 Cutadapt version: 1.13
8 Quality Phred score cutoff: 20 8 Quality Phred score cutoff: 20
9 Quality encoding type selected: ASCII+33 9 Quality encoding type selected: ASCII+33
10 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) 10 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
11 Maximum trimming error rate: 0.1 (default) 11 Maximum trimming error rate: 0.1 (default)
12 Minimum required adapter overlap (stringency): 1 bp 12 Minimum required adapter overlap (stringency): 1 bp
14 Length cut-off for read 1: 35 bp (default) 14 Length cut-off for read 1: 35 bp (default)
15 Length cut-off for read 2: 35 bp (default) 15 Length cut-off for read 2: 35 bp (default)
16 Output file will be GZIP compressed 16 Output file will be GZIP compressed
17 17
18 18
19 This is cutadapt 1.8 with Python 3.5.3 19 This is cutadapt 1.13 with Python 3.5.3
20 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq.gz 20 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq.gz
21 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 21 Trimming 1 adapter with at most 10.0% errors in single-end mode ...
22 Finished in 0.10 s (1010 us/read; 0.06 M reads/minute). 22 Finished in 0.01 s (101 us/read; 0.59 M reads/minute).
23 23
24 === Summary === 24 === Summary ===
25 25
26 Total reads processed: 99 26 Total reads processed: 99
27 Reads with adapters: 52 (52.5%) 27 Reads with adapters: 52 (52.5%)
84 84
85 SUMMARISING RUN PARAMETERS 85 SUMMARISING RUN PARAMETERS
86 ========================== 86 ==========================
87 Input filename: input_2.fastq.gz 87 Input filename: input_2.fastq.gz
88 Trimming mode: paired-end 88 Trimming mode: paired-end
89 Trim Galore version: 0.4.0 89 Trim Galore version: 0.4.3
90 Cutadapt version: 1.8 90 Cutadapt version: 1.13
91 Quality Phred score cutoff: 20 91 Quality Phred score cutoff: 20
92 Quality encoding type selected: ASCII+33 92 Quality encoding type selected: ASCII+33
93 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) 93 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
94 Maximum trimming error rate: 0.1 (default) 94 Maximum trimming error rate: 0.1 (default)
95 Minimum required adapter overlap (stringency): 1 bp 95 Minimum required adapter overlap (stringency): 1 bp
97 Length cut-off for read 1: 35 bp (default) 97 Length cut-off for read 1: 35 bp (default)
98 Length cut-off for read 2: 35 bp (default) 98 Length cut-off for read 2: 35 bp (default)
99 Output file will be GZIP compressed 99 Output file will be GZIP compressed
100 100
101 101
102 This is cutadapt 1.8 with Python 3.5.3 102 This is cutadapt 1.13 with Python 3.5.3
103 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq.gz 103 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq.gz
104 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 104 Trimming 1 adapter with at most 10.0% errors in single-end mode ...
105 Finished in 0.10 s (1000 us/read; 0.06 M reads/minute). 105 Finished in 0.01 s (100 us/read; 0.60 M reads/minute).
106 106
107 === Summary === 107 === Summary ===
108 108
109 Total reads processed: 100 109 Total reads processed: 100
110 Reads with adapters: 59 (59.0%) 110 Reads with adapters: 59 (59.0%)