Mercurial > repos > bgruening > trim_galore
comparison test-data/paired_example_results2.txt @ 11:80cd83b11214 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 78bee2b2efd36fe9399ce574159fc007cb6bdfbf
author | bgruening |
---|---|
date | Mon, 24 Apr 2017 14:30:07 -0400 |
parents | b4e39d993fc8 |
children | 084bbd8ba7b8 |
comparison
equal
deleted
inserted
replaced
10:b4e39d993fc8 | 11:80cd83b11214 |
---|---|
1 | 1 |
2 SUMMARISING RUN PARAMETERS | 2 SUMMARISING RUN PARAMETERS |
3 ========================== | 3 ========================== |
4 Input filename: input_1.fastq | 4 Input filename: input_1.fastq |
5 Trimming mode: paired-end | 5 Trimming mode: paired-end |
6 Trim Galore version: 0.4.0 | 6 Trim Galore version: 0.4.3 |
7 Cutadapt version: 1.8 | 7 Cutadapt version: 1.13 |
8 Quality Phred score cutoff: 20 | 8 Quality Phred score cutoff: 20 |
9 Quality encoding type selected: ASCII+33 | 9 Quality encoding type selected: ASCII+33 |
10 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) | 10 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) |
11 Maximum trimming error rate: 0.1 (default) | 11 Maximum trimming error rate: 0.1 (default) |
12 Minimum required adapter overlap (stringency): 1 bp | 12 Minimum required adapter overlap (stringency): 1 bp |
13 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp | 13 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp |
14 | 14 |
15 | 15 |
16 This is cutadapt 1.8 with Python 3.5.3 | 16 This is cutadapt 1.13 with Python 3.5.3 |
17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq | 17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq |
18 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... | 18 Trimming 1 adapter with at most 10.0% errors in single-end mode ... |
19 Finished in 0.10 s (1010 us/read; 0.06 M reads/minute). | 19 Finished in 0.01 s (101 us/read; 0.59 M reads/minute). |
20 | 20 |
21 === Summary === | 21 === Summary === |
22 | 22 |
23 Total reads processed: 99 | 23 Total reads processed: 99 |
24 Reads with adapters: 52 (52.5%) | 24 Reads with adapters: 52 (52.5%) |
81 | 81 |
82 SUMMARISING RUN PARAMETERS | 82 SUMMARISING RUN PARAMETERS |
83 ========================== | 83 ========================== |
84 Input filename: input_2.fastq | 84 Input filename: input_2.fastq |
85 Trimming mode: paired-end | 85 Trimming mode: paired-end |
86 Trim Galore version: 0.4.0 | 86 Trim Galore version: 0.4.3 |
87 Cutadapt version: 1.8 | 87 Cutadapt version: 1.13 |
88 Quality Phred score cutoff: 20 | 88 Quality Phred score cutoff: 20 |
89 Quality encoding type selected: ASCII+33 | 89 Quality encoding type selected: ASCII+33 |
90 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) | 90 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) |
91 Maximum trimming error rate: 0.1 (default) | 91 Maximum trimming error rate: 0.1 (default) |
92 Minimum required adapter overlap (stringency): 1 bp | 92 Minimum required adapter overlap (stringency): 1 bp |
93 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp | 93 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp |
94 | 94 |
95 | 95 |
96 This is cutadapt 1.8 with Python 3.5.3 | 96 This is cutadapt 1.13 with Python 3.5.3 |
97 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq | 97 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq |
98 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... | 98 Trimming 1 adapter with at most 10.0% errors in single-end mode ... |
99 Finished in 0.10 s (1000 us/read; 0.06 M reads/minute). | 99 Finished in 0.01 s (100 us/read; 0.60 M reads/minute). |
100 | 100 |
101 === Summary === | 101 === Summary === |
102 | 102 |
103 Total reads processed: 100 | 103 Total reads processed: 100 |
104 Reads with adapters: 59 (59.0%) | 104 Reads with adapters: 59 (59.0%) |