Mercurial > repos > bgruening > trim_galore

comparison test-data/paired_example_results2gz.txt @ 11:80cd83b11214 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 78bee2b2efd36fe9399ce574159fc007cb6bdfbf
author bgruening
date Mon, 24 Apr 2017 14:30:07 -0400
parents b4e39d993fc8
children 084bbd8ba7b8
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10:b4e39d993fc8 11:80cd83b11214
1 1
2 SUMMARISING RUN PARAMETERS 2 SUMMARISING RUN PARAMETERS
3 ========================== 3 ==========================
4 Input filename: input_1.fastq.gz 4 Input filename: input_1.fastq.gz
5 Trimming mode: paired-end 5 Trimming mode: paired-end
6 Trim Galore version: 0.4.0 6 Trim Galore version: 0.4.3
7 Cutadapt version: 1.8 7 Cutadapt version: 1.13
8 Quality Phred score cutoff: 20 8 Quality Phred score cutoff: 20
9 Quality encoding type selected: ASCII+33 9 Quality encoding type selected: ASCII+33
10 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) 10 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
11 Maximum trimming error rate: 0.1 (default) 11 Maximum trimming error rate: 0.1 (default)
12 Minimum required adapter overlap (stringency): 1 bp 12 Minimum required adapter overlap (stringency): 1 bp
13 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp 13 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
14 Output file will be GZIP compressed 14 Output file will be GZIP compressed
15 15
16 16
17 This is cutadapt 1.8 with Python 3.5.3 17 This is cutadapt 1.13 with Python 3.5.3
18 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq.gz 18 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq.gz
19 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 19 Trimming 1 adapter with at most 10.0% errors in single-end mode ...
20 Finished in 0.10 s (1010 us/read; 0.06 M reads/minute). 20 Finished in 0.01 s (101 us/read; 0.59 M reads/minute).
21 21
22 === Summary === 22 === Summary ===
23 23
24 Total reads processed: 99 24 Total reads processed: 99
25 Reads with adapters: 52 (52.5%) 25 Reads with adapters: 52 (52.5%)
82 82
83 SUMMARISING RUN PARAMETERS 83 SUMMARISING RUN PARAMETERS
84 ========================== 84 ==========================
85 Input filename: input_2.fastq.gz 85 Input filename: input_2.fastq.gz
86 Trimming mode: paired-end 86 Trimming mode: paired-end
87 Trim Galore version: 0.4.0 87 Trim Galore version: 0.4.3
88 Cutadapt version: 1.8 88 Cutadapt version: 1.13
89 Quality Phred score cutoff: 20 89 Quality Phred score cutoff: 20
90 Quality encoding type selected: ASCII+33 90 Quality encoding type selected: ASCII+33
91 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) 91 Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
92 Maximum trimming error rate: 0.1 (default) 92 Maximum trimming error rate: 0.1 (default)
93 Minimum required adapter overlap (stringency): 1 bp 93 Minimum required adapter overlap (stringency): 1 bp
94 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp 94 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
95 Output file will be GZIP compressed 95 Output file will be GZIP compressed
96 96
97 97
98 This is cutadapt 1.8 with Python 3.5.3 98 This is cutadapt 1.13 with Python 3.5.3
99 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq.gz 99 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq.gz
100 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 100 Trimming 1 adapter with at most 10.0% errors in single-end mode ...
101 Finished in 0.10 s (1000 us/read; 0.06 M reads/minute). 101 Finished in 0.01 s (100 us/read; 0.60 M reads/minute).
102 102
103 === Summary === 103 === Summary ===
104 104
105 Total reads processed: 100 105 Total reads processed: 100
106 Reads with adapters: 59 (59.0%) 106 Reads with adapters: 59 (59.0%)