Mercurial > repos > bgruening > trim_galore

comparison test-data/paired_example_results2.txt @ 10:b4e39d993fc8 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit bbef69cc08154b5c156c25f9ca43df0915803856
author bgruening
date Thu, 20 Apr 2017 09:14:30 -0400
parents 11962ce40855
children 80cd83b11214
comparison
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9:1bfc7254232e 10:b4e39d993fc8
1 1
2 SUMMARISING RUN PARAMETERS 2 SUMMARISING RUN PARAMETERS
3 ========================== 3 ==========================
4 Input filename: ./input_mate1 4 Input filename: input_1.fastq
5 Trimming mode: paired-end 5 Trimming mode: paired-end
6 Trim Galore version: 0.4.0 6 Trim Galore version: 0.4.0
7 Cutadapt version: 1.8 7 Cutadapt version: 1.8
8 Quality Phred score cutoff: 20 8 Quality Phred score cutoff: 20
9 Quality encoding type selected: ASCII+33 9 Quality encoding type selected: ASCII+33
11 Maximum trimming error rate: 0.1 (default) 11 Maximum trimming error rate: 0.1 (default)
12 Minimum required adapter overlap (stringency): 1 bp 12 Minimum required adapter overlap (stringency): 1 bp
13 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp 13 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
14 14
15 15
16 This is cutadapt 1.8 with Python 2.7.9 16 This is cutadapt 1.8 with Python 3.5.3
17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA ./input_mate1 17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq
18 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 18 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
19 Finished in 0.10 s (1010 us/read; 0.06 M reads/minute). 19 Finished in 0.10 s (1010 us/read; 0.06 M reads/minute).
20 20
21 === Summary === 21 === Summary ===
22 22
72 73 1 0.0 1 1 72 73 1 0.0 1 1
73 80 1 0.0 1 1 73 80 1 0.0 1 1
74 86 1 0.0 1 1 74 86 1 0.0 1 1
75 75
76 76
77 RUN STATISTICS FOR INPUT FILE: ./input_mate1 77 RUN STATISTICS FOR INPUT FILE: input_1.fastq
78 ============================================= 78 =============================================
79 99 sequences processed in total 79 99 sequences processed in total
80 80
81 81
82 SUMMARISING RUN PARAMETERS 82 SUMMARISING RUN PARAMETERS
83 ========================== 83 ==========================
84 Input filename: ./input_mate2 84 Input filename: input_2.fastq
85 Trimming mode: paired-end 85 Trimming mode: paired-end
86 Trim Galore version: 0.4.0 86 Trim Galore version: 0.4.0
87 Cutadapt version: 1.8 87 Cutadapt version: 1.8
88 Quality Phred score cutoff: 20 88 Quality Phred score cutoff: 20
89 Quality encoding type selected: ASCII+33 89 Quality encoding type selected: ASCII+33
91 Maximum trimming error rate: 0.1 (default) 91 Maximum trimming error rate: 0.1 (default)
92 Minimum required adapter overlap (stringency): 1 bp 92 Minimum required adapter overlap (stringency): 1 bp
93 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp 93 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
94 94
95 95
96 This is cutadapt 1.8 with Python 2.7.9 96 This is cutadapt 1.8 with Python 3.5.3
97 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA ./input_mate2 97 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq
98 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 98 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
99 Finished in 0.10 s (1000 us/read; 0.06 M reads/minute). 99 Finished in 0.10 s (1000 us/read; 0.06 M reads/minute).
100 100
101 === Summary === 101 === Summary ===
102 102
155 60 1 0.0 1 1 155 60 1 0.0 1 1
156 67 1 0.0 1 1 156 67 1 0.0 1 1
157 80 1 0.0 1 1 157 80 1 0.0 1 1
158 158
159 159
160 RUN STATISTICS FOR INPUT FILE: ./input_mate2 160 RUN STATISTICS FOR INPUT FILE: input_2.fastq
161 ============================================= 161 =============================================
162 100 sequences processed in total 162 100 sequences processed in total
163 163
164 Total number of sequences analysed for the sequence pair length validation: 99 164 Total number of sequences analysed for the sequence pair length validation: 99
165 165