Mercurial > repos > bgruening > trim_galore
diff test-data/sanger_full_range_report_results1.txt @ 6:11962ce40855 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 9198b904ef37fe46007256f1734c33de6d23331b-dirty
author | bgruening |
---|---|
date | Wed, 07 Oct 2015 08:39:59 -0400 |
parents | 2c1f0fe810f7 |
children | b4e39d993fc8 |
line wrap: on
line diff
--- a/test-data/sanger_full_range_report_results1.txt Wed Apr 15 17:31:52 2015 -0400 +++ b/test-data/sanger_full_range_report_results1.txt Wed Oct 07 08:39:59 2015 -0400 @@ -3,34 +3,48 @@ ========================== Input filename: ./input_singles Trimming mode: single-end -Trim Galore version: 0.3.7 +Trim Galore version: 0.4.0 +Cutadapt version: 1.8 Quality Phred score cutoff: 20 Quality encoding type selected: ASCII+33 -Adapter sequence: 'AGATCGGAAGAGC' +Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection)) Maximum trimming error rate: 0.1 (default) Minimum required adapter overlap (stringency): 1 bp Minimum required sequence length before a sequence gets removed: 20 bp -cutadapt version 1.1 +This is cutadapt 1.8 with Python 2.7.9 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_singles -Maximum error rate: 10.00% - Processed reads: 2 - Trimmed reads: 1 ( 50.0%) - Total basepairs: 168 (0.0 Mbp) - Trimmed basepairs: 1 (0.0 Mbp) (0.60% of total) - Too short reads: 0 ( 0.0% of processed reads) - Too long reads: 0 ( 0.0% of processed reads) - Total time: 0.00 s - Time per read: 0.32 ms +Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... +Finished in 0.10 s (50000 us/read; 0.00 M reads/minute). + +=== Summary === + +Total reads processed: 2 +Reads with adapters: 1 (50.0%) +Reads written (passing filters): 2 (100.0%) + +Total basepairs processed: 188 bp +Quality-trimmed: 20 bp (10.6%) +Total written (filtered): 167 bp (88.8%) === Adapter 1 === -Adapter 'AGATCGGAAGAGC', length 13, was trimmed 1 times. +Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times. + +No. of allowed errors: +0-9 bp: 0; 10-13 bp: 1 -Lengths of removed sequences -length count expected -1 1 0.5 +Bases preceding removed adapters: + A: 0.0% + C: 100.0% + G: 0.0% + T: 0.0% + none/other: 0.0% + +Overview of removed sequences +length count expect max.err error counts +1 1 0.5 0 1 RUN STATISTICS FOR INPUT FILE: ./input_singles