--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/paired_collection_example_results3.txt	Wed Apr 15 11:32:11 2015 -0400
@@ -0,0 +1,86 @@
+
+SUMMARISING RUN PARAMETERS
+==========================
+Input filename: ./input_mate1
+Trimming mode: paired-end
+Trim Galore version: 0.3.7
+Quality Phred score cutoff: 20
+Quality encoding type selected: ASCII+33
+Adapter sequence: 'AGATCGGAAGAGC'
+Maximum trimming error rate: 0.1 (default)
+Minimum required adapter overlap (stringency): 1 bp
+Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
+
+
+cutadapt version 1.1
+Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate1
+Maximum error rate: 10.00%
+   Processed reads: 100
+     Trimmed reads: 20 ( 20.0%)
+   Total basepairs:        24894 (0.0 Mbp)
+ Trimmed basepairs:           26 (0.0 Mbp) (0.10% of total)
+   Too short reads: 0 (  0.0% of processed reads)
+    Too long reads: 0 (  0.0% of processed reads)
+        Total time:      0.00 s
+     Time per read:      0.03 ms
+
+=== Adapter 1 ===
+
+Adapter 'AGATCGGAAGAGC', length 13, was trimmed 20 times.
+
+Lengths of removed sequences
+length	count	expected
+1	16	25.0
+2	2	6.2
+3	2	1.6
+
+
+RUN STATISTICS FOR INPUT FILE: ./input_mate1
+=============================================
+100 sequences processed in total
+
+
+SUMMARISING RUN PARAMETERS
+==========================
+Input filename: ./input_mate2
+Trimming mode: paired-end
+Trim Galore version: 0.3.7
+Quality Phred score cutoff: 20
+Quality encoding type selected: ASCII+33
+Adapter sequence: 'AGATCGGAAGAGC'
+Maximum trimming error rate: 0.1 (default)
+Minimum required adapter overlap (stringency): 1 bp
+Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
+
+
+cutadapt version 1.1
+Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate2
+Maximum error rate: 10.00%
+   Processed reads: 100
+     Trimmed reads: 24 ( 24.0%)
+   Total basepairs:        24354 (0.0 Mbp)
+ Trimmed basepairs:           36 (0.0 Mbp) (0.15% of total)
+   Too short reads: 0 (  0.0% of processed reads)
+    Too long reads: 0 (  0.0% of processed reads)
+        Total time:      0.01 s
+     Time per read:      0.10 ms
+
+=== Adapter 1 ===
+
+Adapter 'AGATCGGAAGAGC', length 13, was trimmed 24 times.
+
+Lengths of removed sequences
+length	count	expected
+1	15	25.0
+2	7	6.2
+3	1	1.6
+4	1	0.4
+
+
+RUN STATISTICS FOR INPUT FILE: ./input_mate2
+=============================================
+100 sequences processed in total
+
+Total number of sequences analysed for the sequence pair length validation: 100
+
+Number of sequence pairs removed because at least one read was shorter than the length cutoff (20 bp): 1 (1.00%)