--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/paired_collection_example_results3gz.txt	Thu Apr 20 09:14:30 2017 -0400
@@ -0,0 +1,172 @@
+
+SUMMARISING RUN PARAMETERS
+==========================
+Input filename: input_1.fastq.gz
+Trimming mode: paired-end
+Trim Galore version: 0.4.0
+Cutadapt version: 1.8
+Quality Phred score cutoff: 20
+Quality encoding type selected: ASCII+33
+Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
+Maximum trimming error rate: 0.1 (default)
+Minimum required adapter overlap (stringency): 1 bp
+Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
+Length cut-off for read 1: 35 bp (default)
+Length cut-off for read 2: 35 bp (default)
+Output file will be GZIP compressed
+
+
+This is cutadapt 1.8 with Python 3.5.3
+Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq.gz
+Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
+Finished in 0.10 s (1010 us/read; 0.06 M reads/minute).
+
+=== Summary ===
+
+Total reads processed:                      99
+Reads with adapters:                        52 (52.5%)
+Reads written (passing filters):            99 (100.0%)
+
+Total basepairs processed:        24,849 bp
+Quality-trimmed:                     205 bp (0.8%)
+Total written (filtered):         23,339 bp (93.9%)
+
+=== Adapter 1 ===
+
+Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 52 times.
+
+No. of allowed errors:
+0-9 bp: 0; 10-12 bp: 1
+
+Bases preceding removed adapters:
+  A: 9.6%
+  C: 38.5%
+  G: 23.1%
+  T: 28.8%
+  none/other: 0.0%
+
+Overview of removed sequences
+length	count	expect	max.err	error counts
+1	11	24.8	0	11
+2	5	6.2	0	5
+3	3	1.5	0	3
+4	3	0.4	0	3
+12	1	0.0	1	1
+13	2	0.0	1	2
+14	1	0.0	1	1
+16	1	0.0	1	1
+17	1	0.0	1	0 1
+20	2	0.0	1	2
+21	1	0.0	1	1
+24	1	0.0	1	1
+26	2	0.0	1	2
+31	1	0.0	1	1
+33	1	0.0	1	1
+41	2	0.0	1	2
+49	1	0.0	1	1
+50	1	0.0	1	1
+54	1	0.0	1	1
+56	1	0.0	1	1
+58	2	0.0	1	2
+60	1	0.0	1	1
+67	2	0.0	1	2
+68	1	0.0	1	1
+69	1	0.0	1	1
+73	1	0.0	1	1
+80	1	0.0	1	1
+86	1	0.0	1	1
+
+
+RUN STATISTICS FOR INPUT FILE: input_1.fastq.gz
+=============================================
+99 sequences processed in total
+
+
+SUMMARISING RUN PARAMETERS
+==========================
+Input filename: input_2.fastq.gz
+Trimming mode: paired-end
+Trim Galore version: 0.4.0
+Cutadapt version: 1.8
+Quality Phred score cutoff: 20
+Quality encoding type selected: ASCII+33
+Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
+Maximum trimming error rate: 0.1 (default)
+Minimum required adapter overlap (stringency): 1 bp
+Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
+Length cut-off for read 1: 35 bp (default)
+Length cut-off for read 2: 35 bp (default)
+Output file will be GZIP compressed
+
+
+This is cutadapt 1.8 with Python 3.5.3
+Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq.gz
+Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
+Finished in 0.10 s (1000 us/read; 0.06 M reads/minute).
+
+=== Summary ===
+
+Total reads processed:                     100
+Reads with adapters:                        59 (59.0%)
+Reads written (passing filters):           100 (100.0%)
+
+Total basepairs processed:        25,100 bp
+Quality-trimmed:                     746 bp (3.0%)
+Total written (filtered):         23,276 bp (92.7%)
+
+=== Adapter 1 ===
+
+Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 59 times.
+
+No. of allowed errors:
+0-9 bp: 0; 10-12 bp: 1
+
+Bases preceding removed adapters:
+  A: 11.9%
+  C: 39.0%
+  G: 8.5%
+  T: 40.7%
+  none/other: 0.0%
+
+Overview of removed sequences
+length	count	expect	max.err	error counts
+1	16	25.0	0	16
+2	7	6.2	0	7
+3	1	1.6	0	1
+4	2	0.4	0	2
+6	2	0.0	0	2
+9	2	0.0	0	2
+10	1	0.0	1	1
+13	1	0.0	1	1
+14	2	0.0	1	2
+15	1	0.0	1	1
+16	1	0.0	1	1
+17	1	0.0	1	1
+19	2	0.0	1	2
+21	1	0.0	1	1
+25	1	0.0	1	1
+30	1	0.0	1	1
+32	2	0.0	1	2
+34	1	0.0	1	1
+36	2	0.0	1	2
+38	1	0.0	1	1
+40	1	0.0	1	1
+41	1	0.0	1	1
+42	1	0.0	1	1
+43	1	0.0	1	1
+49	1	0.0	1	1
+51	1	0.0	1	1
+56	1	0.0	1	1
+57	1	0.0	1	1
+60	1	0.0	1	1
+67	1	0.0	1	1
+80	1	0.0	1	1
+
+
+RUN STATISTICS FOR INPUT FILE: input_2.fastq.gz
+=============================================
+100 sequences processed in total
+
+Total number of sequences analysed for the sequence pair length validation: 99
+
+Number of sequence pairs removed because at least one read was shorter than the length cutoff (20 bp): 1 (1.01%)