Mercurial > repos > bgruening > trim_galore
diff test-data/paired_example_results2.txt @ 10:b4e39d993fc8 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit bbef69cc08154b5c156c25f9ca43df0915803856
| author | bgruening |
|---|---|
| date | Thu, 20 Apr 2017 09:14:30 -0400 |
| parents | 11962ce40855 |
| children | 80cd83b11214 |
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--- a/test-data/paired_example_results2.txt Thu Mar 16 13:48:46 2017 -0400 +++ b/test-data/paired_example_results2.txt Thu Apr 20 09:14:30 2017 -0400 @@ -1,7 +1,7 @@ SUMMARISING RUN PARAMETERS ========================== -Input filename: ./input_mate1 +Input filename: input_1.fastq Trimming mode: paired-end Trim Galore version: 0.4.0 Cutadapt version: 1.8 @@ -13,8 +13,8 @@ Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp -This is cutadapt 1.8 with Python 2.7.9 -Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA ./input_mate1 +This is cutadapt 1.8 with Python 3.5.3 +Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... Finished in 0.10 s (1010 us/read; 0.06 M reads/minute). @@ -74,14 +74,14 @@ 86 1 0.0 1 1 -RUN STATISTICS FOR INPUT FILE: ./input_mate1 +RUN STATISTICS FOR INPUT FILE: input_1.fastq ============================================= 99 sequences processed in total SUMMARISING RUN PARAMETERS ========================== -Input filename: ./input_mate2 +Input filename: input_2.fastq Trimming mode: paired-end Trim Galore version: 0.4.0 Cutadapt version: 1.8 @@ -93,8 +93,8 @@ Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp -This is cutadapt 1.8 with Python 2.7.9 -Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA ./input_mate2 +This is cutadapt 1.8 with Python 3.5.3 +Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... Finished in 0.10 s (1000 us/read; 0.06 M reads/minute). @@ -157,7 +157,7 @@ 80 1 0.0 1 1 -RUN STATISTICS FOR INPUT FILE: ./input_mate2 +RUN STATISTICS FOR INPUT FILE: input_2.fastq ============================================= 100 sequences processed in total