Mercurial > repos > bgruening > trim_galore
diff test-data/paired_example_results2.txt @ 18:b94789823aad draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit f8ccc97b827b98db1bcf42073d3c5eb4e3f134c4
| author | bgruening |
|---|---|
| date | Sat, 10 May 2025 08:09:10 +0000 |
| parents | cd7e644cae1d |
| children |
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--- a/test-data/paired_example_results2.txt Wed Mar 05 18:50:58 2025 +0000 +++ b/test-data/paired_example_results2.txt Sat May 10 08:09:10 2025 +0000 @@ -3,9 +3,9 @@ ========================== Input filename: input_1.fastq Trimming mode: paired-end -Trim Galore version: 0.6.7 -Cutadapt version: 3.4 -Python version: could not detect +Trim Galore version: 0.6.10 +Cutadapt version: 5.0 +Python version: 3.12.10 Number of cores used for trimming: 4 Quality Phred score cutoff: 20 Quality encoding type selected: ASCII+33 @@ -16,10 +16,9 @@ Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp -This is cutadapt 3.4 with Python 3.9.6 +This is cutadapt 5.0 with Python 3.12.10 Command line parameters: -j 4 -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq -Processing reads on 4 cores in single-end mode ... -Finished in 0.01 s (117 µs/read; 0.51 M reads/minute). +Processing single-end reads on 4 cores ... === Summary === @@ -35,6 +34,7 @@ Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 52 times +Minimum overlap: 1 No. of allowed errors: 1-9 bp: 0; 10-12 bp: 1 @@ -85,9 +85,9 @@ ========================== Input filename: input_2.fastq Trimming mode: paired-end -Trim Galore version: 0.6.7 -Cutadapt version: 3.4 -Python version: could not detect +Trim Galore version: 0.6.10 +Cutadapt version: 5.0 +Python version: 3.12.10 Number of cores used for trimming: 4 Quality Phred score cutoff: 20 Quality encoding type selected: ASCII+33 @@ -98,10 +98,9 @@ Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp -This is cutadapt 3.4 with Python 3.9.6 +This is cutadapt 5.0 with Python 3.12.10 Command line parameters: -j 4 -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq -Processing reads on 4 cores in single-end mode ... -Finished in 0.03 s (256 µs/read; 0.23 M reads/minute). +Processing single-end reads on 4 cores ... === Summary === @@ -117,6 +116,7 @@ Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 58 times +Minimum overlap: 1 No. of allowed errors: 1-9 bp: 0; 10-12 bp: 1