Mercurial > repos > bgruening > trim_galore
diff trim_galore.xml @ 18:b94789823aad draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit f8ccc97b827b98db1bcf42073d3c5eb4e3f134c4
| author | bgruening |
|---|---|
| date | Sat, 10 May 2025 08:09:10 +0000 |
| parents | eefb644655a5 |
| children |
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--- a/trim_galore.xml Wed Mar 05 18:50:58 2025 +0000 +++ b/trim_galore.xml Sat May 10 08:09:10 2025 +0000 @@ -415,7 +415,7 @@ <param name="report" value="true" /> </conditional> <output name="trimmed_reads_single" file="sanger_full_range_results1.fastqsanger" ftype="fastqsanger"/> - <output name="report_file" file="sanger_full_range_report_results1.txt" ftype="txt" lines_diff="12" /> + <output name="report_file" file="sanger_full_range_report_results1.txt" ftype="txt" lines_diff="13" /> </test> <test expect_num_outputs="2"> <conditional name="singlePaired"> @@ -427,7 +427,7 @@ <param name="report" value="true" /> </conditional> <output name="trimmed_reads_single" file="sanger_full_range_results1.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> - <output name="report_file" file="sanger_full_range_report_results1gz.txt" ftype="txt" lines_diff="12" /> + <output name="report_file" file="sanger_full_range_report_results1gz.txt" ftype="txt" lines_diff="10" /> </test> <test expect_num_outputs="1"> @@ -486,7 +486,7 @@ </conditional> <output name="trimmed_reads_pair1" file="paired_example_pair1_results2.fastqsanger" ftype="fastqsanger"/> <output name="trimmed_reads_pair2" file="paired_example_pair2_results2.fastqsanger" ftype="fastqsanger"/> - <output name="report_file" file="paired_example_results2.txt" ftype="txt" lines_diff="24" /> + <output name="report_file" file="paired_example_results2.txt" ftype="txt" lines_diff="20" /> </test> <test expect_num_outputs="3"> <conditional name="singlePaired"> @@ -500,7 +500,7 @@ </conditional> <output name="trimmed_reads_pair1" file="paired_example_pair1_results2.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> <output name="trimmed_reads_pair2" file="paired_example_pair2_results2.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> - <output name="report_file" file="paired_example_results2gz.txt" ftype="txt" lines_diff="24" /> + <output name="report_file" file="paired_example_results2gz.txt" ftype="txt" lines_diff="20" /> </test> <test expect_num_outputs="7"> @@ -520,7 +520,7 @@ <param name="retain_unpaired_select" value="retain_unpaired_output" /> </conditional> </conditional> - <output name="report_file" file="paired_collection_example_results3.txt" ftype="txt" lines_diff="24" /> + <output name="report_file" file="paired_collection_example_results3.txt" ftype="txt" lines_diff="20" /> <output_collection name="trimmed_reads_paired_collection" type="paired"> <element name="forward" file="paired_collection_example_pair1_results3.fastqsanger" ftype="fastqsanger"/> <element name="reverse" file="paired_collection_example_pair2_results3.fastqsanger" ftype="fastqsanger"/> @@ -548,7 +548,7 @@ <param name="retain_unpaired_select" value="retain_unpaired_output" /> </conditional> </conditional> - <output name="report_file" file="paired_collection_example_results3gz.txt" ftype="txt" lines_diff="25" /> + <output name="report_file" file="paired_collection_example_results3gz.txt" ftype="txt" lines_diff="20" /> <output_collection name="trimmed_reads_paired_collection" type="paired"> <element name="forward" file="paired_collection_example_pair1_results3.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> <element name="reverse" file="paired_collection_example_pair2_results3.fastq.gz" ftype="fastqsanger.gz" decompress="true" /> @@ -811,7 +811,7 @@ | | *option --amplicon* -.. _Trim Galore!: http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ +.. _Trim Galore!: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ .. _Multi-tissue DNA methylation age predictor in mouse: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1203-5 ]]></help>