SUMMARISING RUN PARAMETERS
==========================
Input filename: ./input_mate1
Trimming mode: paired-end
Trim Galore version: 0.3.7
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'AGATCGGAAGAGC'
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp


cutadapt version 1.1
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate1
Maximum error rate: 10.00%
   Processed reads: 100
     Trimmed reads: 20 ( 20.0%)
   Total basepairs:        24894 (0.0 Mbp)
 Trimmed basepairs:           26 (0.0 Mbp) (0.10% of total)
   Too short reads: 0 (  0.0% of processed reads)
    Too long reads: 0 (  0.0% of processed reads)
        Total time:      0.00 s
     Time per read:      0.03 ms

=== Adapter 1 ===

Adapter 'AGATCGGAAGAGC', length 13, was trimmed 20 times.

Lengths of removed sequences
length	count	expected
1	16	25.0
2	2	6.2
3	2	1.6


RUN STATISTICS FOR INPUT FILE: ./input_mate1
=============================================
100 sequences processed in total


SUMMARISING RUN PARAMETERS
==========================
Input filename: ./input_mate2
Trimming mode: paired-end
Trim Galore version: 0.3.7
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'AGATCGGAAGAGC'
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp


cutadapt version 1.1
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate2
Maximum error rate: 10.00%
   Processed reads: 100
     Trimmed reads: 24 ( 24.0%)
   Total basepairs:        24354 (0.0 Mbp)
 Trimmed basepairs:           36 (0.0 Mbp) (0.15% of total)
   Too short reads: 0 (  0.0% of processed reads)
    Too long reads: 0 (  0.0% of processed reads)
        Total time:      0.01 s
     Time per read:      0.10 ms

=== Adapter 1 ===

Adapter 'AGATCGGAAGAGC', length 13, was trimmed 24 times.

Lengths of removed sequences
length	count	expected
1	15	25.0
2	7	6.2
3	1	1.6
4	1	0.4


RUN STATISTICS FOR INPUT FILE: ./input_mate2
=============================================
100 sequences processed in total

Total number of sequences analysed for the sequence pair length validation: 100

Number of sequence pairs removed because at least one read was shorter than the length cutoff (20 bp): 1 (1.00%)