Mercurial > repos > bgruening > trna_prediction

diff tRNAscan.py @ 2:358f58401cd6 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/trna_prediction commit cfb19d75629f02e0dea4475c16c016ed5510eb44
author bgruening
date Wed, 26 Jul 2017 10:14:05 -0400
parents d34f31cbc9dd
children
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--- a/tRNAscan.py	Thu Jan 22 13:15:51 2015 -0500
+++ b/tRNAscan.py	Wed Jul 26 10:14:05 2017 -0400
@@ -8,13 +8,12 @@
 from Bio.SeqRecord import SeqRecord
 import subprocess
 
-
 def main(args):
     """
         Call from galaxy:
         tRNAscan.py $organism $mode $showPrimSecondOpt $disablePseudo $showCodons $tabular_output $inputfile $fasta_output
 
-            tRNAscan-SE $organism $mode $showPrimSecondOpt $disablePseudo $showCodons -d -Q -y -q -b -o $tabular_output $inputfile;
+            tRNAscan-SE $organism $mode $showPrimSecondOpt $disablePseudo $showCodons -Q -y -q -b -o $tabular_output $inputfile;
     """
     cmd = """tRNAscan-SE -Q -y -q -b %s""" % ' '.join( args[:-1] )
     child = subprocess.Popen(cmd.split(),