Mercurial > repos > bgruening > uniprot_rest_interface

comparison uniprot.xml @ 6:054483e27a35 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit f7a71c09b68d85a73a7ce761b4e64d5de29daee0
author bgruening
date Sun, 16 Sep 2018 13:41:08 -0400
parents fe94765e8814
children bfdc6a7ffd3a
comparison
equal deleted inserted replaced
5:f7ebd1b4783b 6:054483e27a35
1 <tool id="uniprot" name="UniProt" version="0.1"> 1 <tool id="uniprot" name="UniProt" version="0.2">
2 <description>ID mapping and retrieval</description> 2 <description>ID mapping and retrieval</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="2.7">requests</requirement> 7 <requirement type="package" version="2.19.1">requests</requirement>
8 </requirements> 8 </requirements>
9 <version_command>echo "UniProt ID mapping for Galaxy in version 0.1"</version_command> 9 <version_command>echo "UniProt ID mapping for Galaxy in version 0.1"</version_command>
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 11
12 cut -f ${id_column} $infile > id_file.tabular && 12 cut -f ${id_column} '$infile' > id_file.tabular &&
13 13
14 $__tool_directory__/uniprot.py 14 '$__tool_directory__/uniprot.py'
15 15
16 #if $tool.tool_choice == "retrieve": 16 #if $tool.tool_choice == "retrieve":
17 retrieve -f $tool.format $infile ./output 17 retrieve -f $tool.format id_file.tabular ./output
18 #elif $tool.tool_choice == "map": 18 #elif $tool.tool_choice == "map":
19 map 19 map
20 20
21 #if $tool.from.category_FROM == "uniprot" 21 #if $tool.from.category_FROM == "uniprot"
22 '${tool.from.db_uniprot_FROM}' 22 '${tool.from.db_uniprot_FROM}'