Mercurial > repos > bgruening > uniprot_rest_interface

comparison test-data/test2_retrieve.gff @ 2:fe94765e8814 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit 074fed99c6df6bad17341bbfa57645f222907ad4
author bgruening
date Mon, 10 Apr 2017 13:19:36 -0400
parents cd2a41c65447
children f7ebd1b4783b
comparison
equal deleted inserted replaced
1:cd2a41c65447 2:fe94765e8814
1 ##gff-version 3 1 ##gff-version 3
2 ##sequence-region S0DS17 1 369 2 ##sequence-region S0DS17 1 369
3 S0DS17 UniProtKB Chain 1 369 . . . ID=PRO_0000437163;Note=Cytochrome P450 momooxygenase apf8 3 S0DS17 UniProtKB Chain 1 369 . . . ID=PRO_0000437163;Note=Cytochrome P450 monooxygenase apf8
4 S0DS17 UniProtKB Metal binding 303 303 . . . Note=Iron (heme axial ligand);Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P04798 4 S0DS17 UniProtKB Metal binding 303 303 . . . Note=Iron (heme axial ligand);Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P04798
5 ##sequence-region M5BAG7 1 563
6 M5BAG7 UniProtKB Transmembrane 21 43 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
7 M5BAG7 UniProtKB Transmembrane 49 71 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
8 M5BAG7 UniProtKB Transmembrane 132 153 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
9 M5BAG7 UniProtKB Transmembrane 159 181 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
10 M5BAG7 UniProtKB Transmembrane 236 259 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
11 M5BAG7 UniProtKB Transmembrane 274 296 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
12 M5BAG7 UniProtKB Domain 20 301 . . . Note=ABC transmembrane type-1;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50929
13 M5BAG7 UniProtKB Domain 345 559 . . . Note=ABC transporter;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50893
14 ##sequence-region A0A077Z587 1 772 5 ##sequence-region A0A077Z587 1 772
15 A0A077Z587 UniProtKB Transmembrane 593 617 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius 6 A0A077Z587 UniProtKB Transmembrane 593 617 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
16 A0A077Z587 UniProtKB Transmembrane 637 656 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius 7 A0A077Z587 UniProtKB Transmembrane 637 656 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
17 A0A077Z587 UniProtKB Transmembrane 668 692 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius 8 A0A077Z587 UniProtKB Transmembrane 668 692 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
18 A0A077Z587 UniProtKB Transmembrane 704 727 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius 9 A0A077Z587 UniProtKB Transmembrane 704 727 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
21 A0A077Z587 UniProtKB Domain 552 761 . . . Note=Cytochrome b561;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50939 12 A0A077Z587 UniProtKB Domain 552 761 . . . Note=Cytochrome b561;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50939
22 ##sequence-region A0A077ZFY8 1 973 13 ##sequence-region A0A077ZFY8 1 973
23 A0A077ZFY8 UniProtKB Domain 1 89 . . . Note=Mur_ligase;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF01225 14 A0A077ZFY8 UniProtKB Domain 1 89 . . . Note=Mur_ligase;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF01225
24 A0A077ZFY8 UniProtKB Domain 96 279 . . . Note=Mur_ligase_M;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF08245 15 A0A077ZFY8 UniProtKB Domain 96 279 . . . Note=Mur_ligase_M;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF08245
25 A0A077ZFY8 UniProtKB Domain 300 349 . . . Note=Mur_ligase_C;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF02875 16 A0A077ZFY8 UniProtKB Domain 300 349 . . . Note=Mur_ligase_C;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF02875
17 ##sequence-region Q0P8A9 1 310
18 Q0P8A9 UniProtKB Transmembrane 55 78 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
19 Q0P8A9 UniProtKB Transmembrane 99 124 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
20 Q0P8A9 UniProtKB Transmembrane 136 156 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
21 Q0P8A9 UniProtKB Transmembrane 195 216 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
22 Q0P8A9 UniProtKB Transmembrane 244 264 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
23 Q0P8A9 UniProtKB Domain 93 274 . . . Note=Ni_hydr_CYTB;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF01292
24 ##sequence-region A0A077ZHN8 1 634
25 A0A077ZHN8 UniProtKB Transmembrane 14 36 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
26 A0A077ZHN8 UniProtKB Transmembrane 56 80 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
27 A0A077ZHN8 UniProtKB Transmembrane 113 132 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
28 A0A077ZHN8 UniProtKB Transmembrane 290 310 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
29 A0A077ZHN8 UniProtKB Domain 312 364 . . . Note=HAMP;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50885
30 A0A077ZHN8 UniProtKB Domain 369 598 . . . Note=Methyl-accepting transducer;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50111
31 A0A077ZHN8 UniProtKB Coiled coil 170 204 . . . Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Coils
32 A0A077ZHN8 UniProtKB Coiled coil 569 607 . . . Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Coils
33 ##sequence-region M5BAG7 1 563
34 M5BAG7 UniProtKB Transmembrane 21 43 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
35 M5BAG7 UniProtKB Transmembrane 49 71 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
36 M5BAG7 UniProtKB Transmembrane 132 153 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
37 M5BAG7 UniProtKB Transmembrane 159 181 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
38 M5BAG7 UniProtKB Transmembrane 236 259 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
39 M5BAG7 UniProtKB Transmembrane 274 296 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
40 M5BAG7 UniProtKB Domain 20 301 . . . Note=ABC transmembrane type-1;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50929
41 M5BAG7 UniProtKB Domain 345 559 . . . Note=ABC transporter;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50893
42 M5BAG7 UniProtKB Nucleotide binding 379 386 . . . Note=ATP;Ontology_term=ECO:0000256;evidence=ECO:0000256|PROSITE-ProRule:PRU00434
43 ##sequence-region Q13685 1 434
44 Q13685 UniProtKB Chain 1 434 . . . ID=PRO_0000050832;Note=Angio-associated migratory cell protein
45 Q13685 UniProtKB Repeat 89 129 . . . Note=WD 1
46 Q13685 UniProtKB Repeat 132 171 . . . Note=WD 2
47 Q13685 UniProtKB Repeat 173 212 . . . Note=WD 3
48 Q13685 UniProtKB Repeat 214 254 . . . Note=WD 4
49 Q13685 UniProtKB Repeat 258 299 . . . Note=WD 5
50 Q13685 UniProtKB Repeat 315 354 . . . Note=WD 6
51 Q13685 UniProtKB Repeat 356 395 . . . Note=WD 7
52 Q13685 UniProtKB Repeat 398 433 . . . Note=WD 8
53 Q13685 UniProtKB Compositional bias 53 59 . . . Note=Poly-Glu
54 Q13685 UniProtKB Modified residue 20 20 . . . Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24275569;Dbxref=PMID:24275569
55 Q13685 UniProtKB Natural variant 250 250 . . . ID=VAR_037061;Note=I->V;Dbxref=dbSNP:rs2305835
56 ##sequence-region M5B8V9 1 582
57 M5B8V9 UniProtKB Transmembrane 20 43 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
58 M5B8V9 UniProtKB Transmembrane 55 77 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
59 M5B8V9 UniProtKB Transmembrane 134 154 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
60 M5B8V9 UniProtKB Transmembrane 161 180 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
61 M5B8V9 UniProtKB Transmembrane 236 260 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
62 M5B8V9 UniProtKB Domain 20 302 . . . Note=ABC transmembrane type-1;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50929
63 M5B8V9 UniProtKB Domain 340 570 . . . Note=ABC transporter;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50893
64 M5B8V9 UniProtKB Nucleotide binding 372 379 . . . Note=ATP;Ontology_term=ECO:0000256;evidence=ECO:0000256|PROSITE-ProRule:PRU00434
26 ##sequence-region O14639 1 778 65 ##sequence-region O14639 1 778
27 O14639 UniProtKB Chain 1 778 . . . ID=PRO_0000075697;Note=Actin-binding LIM protein 1 66 O14639 UniProtKB Chain 1 778 . . . ID=PRO_0000075697;Note=Actin-binding LIM protein 1
28 O14639 UniProtKB Domain 97 156 . . . Note=LIM zinc-binding 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125 67 O14639 UniProtKB Domain 97 156 . . . Note=LIM zinc-binding 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125
29 O14639 UniProtKB Domain 156 216 . . . Note=LIM zinc-binding 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125 68 O14639 UniProtKB Domain 156 216 . . . Note=LIM zinc-binding 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125
30 O14639 UniProtKB Domain 224 283 . . . Note=LIM zinc-binding 3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125 69 O14639 UniProtKB Domain 224 283 . . . Note=LIM zinc-binding 3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125
60 O14639 UniProtKB Natural variant 637 637 . . . ID=VAR_050142;Note=R->G;Dbxref=dbSNP:rs7091419 99 O14639 UniProtKB Natural variant 637 637 . . . ID=VAR_050142;Note=R->G;Dbxref=dbSNP:rs7091419
61 O14639 UniProtKB Sequence conflict 499 499 . . . Note=R->L;Ontology_term=ECO:0000305;evidence=ECO:0000305 100 O14639 UniProtKB Sequence conflict 499 499 . . . Note=R->L;Ontology_term=ECO:0000305;evidence=ECO:0000305
62 O14639 UniProtKB Sequence conflict 532 532 . . . Note=A->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 101 O14639 UniProtKB Sequence conflict 532 532 . . . Note=A->R;Ontology_term=ECO:0000305;evidence=ECO:0000305
63 O14639 UniProtKB Sequence conflict 563 563 . . . Note=K->E;Ontology_term=ECO:0000305;evidence=ECO:0000305 102 O14639 UniProtKB Sequence conflict 563 563 . . . Note=K->E;Ontology_term=ECO:0000305;evidence=ECO:0000305
64 O14639 UniProtKB Sequence conflict 578 578 . . . Note=V->I;Ontology_term=ECO:0000305;evidence=ECO:0000305 103 O14639 UniProtKB Sequence conflict 578 578 . . . Note=V->I;Ontology_term=ECO:0000305;evidence=ECO:0000305
65 ##sequence-region M5B8V9 1 582
66 M5B8V9 UniProtKB Transmembrane 20 43 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
67 M5B8V9 UniProtKB Transmembrane 55 77 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
68 M5B8V9 UniProtKB Transmembrane 134 154 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
69 M5B8V9 UniProtKB Transmembrane 161 180 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
70 M5B8V9 UniProtKB Transmembrane 236 260 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
71 M5B8V9 UniProtKB Domain 20 302 . . . Note=ABC transmembrane type-1;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50929
72 M5B8V9 UniProtKB Domain 340 570 . . . Note=ABC transporter;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50893
73 ##sequence-region A0A077ZHN8 1 634
74 A0A077ZHN8 UniProtKB Transmembrane 14 36 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
75 A0A077ZHN8 UniProtKB Transmembrane 56 80 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
76 A0A077ZHN8 UniProtKB Transmembrane 113 132 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
77 A0A077ZHN8 UniProtKB Transmembrane 290 310 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
78 A0A077ZHN8 UniProtKB Domain 312 364 . . . Note=HAMP;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50885
79 A0A077ZHN8 UniProtKB Domain 369 598 . . . Note=Methyl-accepting transducer;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50111
80 A0A077ZHN8 UniProtKB Coiled coil 170 204 . . . Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Coils
81 A0A077ZHN8 UniProtKB Coiled coil 569 607 . . . Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Coils
82 ##sequence-region Q0P8A9 1 310
83 Q0P8A9 UniProtKB Transmembrane 55 78 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
84 Q0P8A9 UniProtKB Transmembrane 99 124 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
85 Q0P8A9 UniProtKB Transmembrane 136 156 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
86 Q0P8A9 UniProtKB Transmembrane 195 216 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
87 Q0P8A9 UniProtKB Transmembrane 244 264 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
88 Q0P8A9 UniProtKB Domain 93 274 . . . Note=Ni_hydr_CYTB;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF01292
89 ##sequence-region Q13685 1 434
90 Q13685 UniProtKB Chain 1 434 . . . ID=PRO_0000050832;Note=Angio-associated migratory cell protein
91 Q13685 UniProtKB Repeat 89 129 . . . Note=WD 1
92 Q13685 UniProtKB Repeat 132 171 . . . Note=WD 2
93 Q13685 UniProtKB Repeat 173 212 . . . Note=WD 3
94 Q13685 UniProtKB Repeat 214 254 . . . Note=WD 4
95 Q13685 UniProtKB Repeat 258 299 . . . Note=WD 5
96 Q13685 UniProtKB Repeat 315 354 . . . Note=WD 6
97 Q13685 UniProtKB Repeat 356 395 . . . Note=WD 7
98 Q13685 UniProtKB Repeat 398 433 . . . Note=WD 8
99 Q13685 UniProtKB Compositional bias 53 59 . . . Note=Poly-Glu
100 Q13685 UniProtKB Modified residue 20 20 . . . Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24275569;Dbxref=PMID:24275569
101 Q13685 UniProtKB Natural variant 250 250 . . . ID=VAR_037061;Note=I->V;Dbxref=dbSNP:rs2305835