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comparison test-data/test2_retrieve.gff @ 10:95fb5712344f draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit 1c020106d4d7f957c9f1ec0d9885bbb2d56e70e7
author bgruening
date Tue, 06 Aug 2024 14:49:45 +0000
parents 468c71dac78a
children
comparison
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9:468c71dac78a 10:95fb5712344f
1 ##gff-version 3
2 ##sequence-region M5BAG7 1 563
3 M5BAG7 UniProtKB Transmembrane 21 43 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
4 M5BAG7 UniProtKB Transmembrane 49 71 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
5 M5BAG7 UniProtKB Transmembrane 132 153 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
6 M5BAG7 UniProtKB Transmembrane 159 181 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
7 M5BAG7 UniProtKB Transmembrane 236 259 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
8 M5BAG7 UniProtKB Transmembrane 274 296 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
9 M5BAG7 UniProtKB Domain 20 301 . . . Note=ABC transmembrane type-1;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50929
10 M5BAG7 UniProtKB Domain 345 559 . . . Note=ABC transporter;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50893
11 M5BAG7 UniProtKB Nucleotide binding 379 386 . . . Note=ATP;Ontology_term=ECO:0000256;evidence=ECO:0000256|PROSITE-ProRule:PRU00434
12 M5BAG7 UniProtKB Region 317 337 . . . Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite
13 ##sequence-region A0A077ZHN8 1 634
14 A0A077ZHN8 UniProtKB Transmembrane 14 36 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
15 A0A077ZHN8 UniProtKB Transmembrane 56 80 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
16 A0A077ZHN8 UniProtKB Transmembrane 113 132 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
17 A0A077ZHN8 UniProtKB Transmembrane 290 310 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
18 A0A077ZHN8 UniProtKB Domain 312 364 . . . Note=HAMP;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50885
19 A0A077ZHN8 UniProtKB Domain 369 598 . . . Note=Methyl-accepting transducer;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50111
20 A0A077ZHN8 UniProtKB Coiled coil 170 204 . . . Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Coils
21 A0A077ZHN8 UniProtKB Coiled coil 569 607 . . . Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Coils
22 ##sequence-region M5B8V9 1 582
23 M5B8V9 UniProtKB Transmembrane 20 43 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
24 M5B8V9 UniProtKB Transmembrane 55 77 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
25 M5B8V9 UniProtKB Transmembrane 134 154 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
26 M5B8V9 UniProtKB Transmembrane 161 180 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
27 M5B8V9 UniProtKB Transmembrane 236 260 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
28 M5B8V9 UniProtKB Domain 20 302 . . . Note=ABC transmembrane type-1;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50929
29 M5B8V9 UniProtKB Domain 340 570 . . . Note=ABC transporter;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50893
30 M5B8V9 UniProtKB Nucleotide binding 372 379 . . . Note=ATP;Ontology_term=ECO:0000256;evidence=ECO:0000256|PROSITE-ProRule:PRU00434
31 ##sequence-region S0DS17 1 369
32 S0DS17 UniProtKB Chain 1 369 . . . ID=PRO_0000437163;Note=Cytochrome P450 monooxygenase apf8
33 S0DS17 UniProtKB Metal binding 303 303 . . . Note=Iron (heme axial ligand);Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P04798
34 ##sequence-region A0A077Z587 1 772
35 A0A077Z587 UniProtKB Transmembrane 593 617 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
36 A0A077Z587 UniProtKB Transmembrane 637 656 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
37 A0A077Z587 UniProtKB Transmembrane 668 692 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
38 A0A077Z587 UniProtKB Transmembrane 704 727 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
39 A0A077Z587 UniProtKB Transmembrane 733 755 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
40 A0A077Z587 UniProtKB Domain 20 94 . . . Note=PDZ;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50106
41 A0A077Z587 UniProtKB Domain 552 761 . . . Note=Cytochrome b561;Ontology_term=ECO:0000259;evidence=ECO:0000259|PROSITE:PS50939
42 ##sequence-region Q0P8A9 1 310
43 Q0P8A9 UniProtKB Transmembrane 55 78 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
44 Q0P8A9 UniProtKB Transmembrane 99 124 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
45 Q0P8A9 UniProtKB Transmembrane 136 156 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
46 Q0P8A9 UniProtKB Transmembrane 195 216 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
47 Q0P8A9 UniProtKB Transmembrane 244 264 . . . Note=Helical;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Phobius
48 Q0P8A9 UniProtKB Domain 93 274 . . . Note=Ni_hydr_CYTB;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF01292
49 ##sequence-region O14639 1 778
50 O14639 UniProtKB Chain 1 778 . . . ID=PRO_0000075697;Note=Actin-binding LIM protein 1
51 O14639 UniProtKB Domain 97 156 . . . Note=LIM zinc-binding 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125
52 O14639 UniProtKB Domain 156 216 . . . Note=LIM zinc-binding 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125
53 O14639 UniProtKB Domain 224 283 . . . Note=LIM zinc-binding 3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125
54 O14639 UniProtKB Domain 283 343 . . . Note=LIM zinc-binding 4;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00125
55 O14639 UniProtKB Domain 710 778 . . . Note=HP;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00595
56 O14639 UniProtKB Coiled coil 590 614 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255
57 O14639 UniProtKB Modified residue 216 216 . . . Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q8K4G5
58 O14639 UniProtKB Modified residue 367 367 . . . Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:19690332;Dbxref=PMID:19690332
59 O14639 UniProtKB Modified residue 373 373 . . . Note=Phosphotyrosine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:19690332;Dbxref=PMID:19690332
60 O14639 UniProtKB Modified residue 396 396 . . . Note=Phosphotyrosine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:15592455;Dbxref=PMID:15592455
61 O14639 UniProtKB Modified residue 422 422 . . . Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
62 O14639 UniProtKB Modified residue 426 426 . . . Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:24275569;Dbxref=PMID:19690332,PMID:24275569
63 O14639 UniProtKB Modified residue 431 431 . . . Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:19690332,PMID:23186163
64 O14639 UniProtKB Modified residue 433 433 . . . Note=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:19690332;Dbxref=PMID:19690332
65 O14639 UniProtKB Modified residue 435 435 . . . Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:21406692,ECO:0000244|PubMed:23186163,ECO:0000244|PubMed:24275569;Dbxref=PMID:18669648,PMID:19690332,PMID:20068231,PMID:21406692,PMID:23186163,PMID:24275569
66 O14639 UniProtKB Modified residue 439 439 . . . Note=Phosphotyrosine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:15144186;Dbxref=PMID:15144186
67 O14639 UniProtKB Modified residue 452 452 . . . Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
68 O14639 UniProtKB Modified residue 455 455 . . . Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:23186163,ECO:0000244|PubMed:24275569;Dbxref=PMID:18669648,PMID:23186163,PMID:24275569
69 O14639 UniProtKB Modified residue 458 458 . . . Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:23186163
70 O14639 UniProtKB Modified residue 498 498 . . . Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q8K4G5
71 O14639 UniProtKB Modified residue 587 587 . . . Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:23186163
72 O14639 UniProtKB Modified residue 640 640 . . . Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231;Dbxref=PMID:18669648,PMID:20068231
73 O14639 UniProtKB Modified residue 655 655 . . . Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:23186163
74 O14639 UniProtKB Modified residue 677 677 . . . Note=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q8K4G5
75 O14639 UniProtKB Modified residue 706 706 . . . Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24275569;Dbxref=PMID:24275569
76 O14639 UniProtKB Cross-link 620 620 . . . Note=Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2);Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:28112733;Dbxref=PMID:28112733
77 O14639 UniProtKB Alternative sequence 1 316 . . . ID=VSP_012099;Note=In isoform 3%2C isoform 4 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005;Dbxref=PMID:14702039,PMID:15489334,PMID:17974005
78 O14639 UniProtKB Alternative sequence 1 81 . . . ID=VSP_012100;Note=In isoform 2 and isoform 6. MPAFLGLKCLGKLCSSEKSKVTSSERTSARGSNRKRLIVEDRRVSGTSFTAHRRATITHLLYLCPKDYCPRGRVCNSVDPF->MLMTLEMTELTDPHHTMGDYK;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:7584044;Dbxref=PMID:14702039,PMID:7584044
79 O14639 UniProtKB Alternative sequence 347 347 . . . ID=VSP_041185;Note=In isoform 5 and isoform 6. R->RLPNIRRSSSDFFYSKSLIRRTGRSPSLQ;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
80 O14639 UniProtKB Alternative sequence 348 373 . . . ID=VSP_012101;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
81 O14639 UniProtKB Alternative sequence 480 514 . . . ID=VSP_012102;Note=In isoform 3%2C isoform 4 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005;Dbxref=PMID:14702039,PMID:15489334,PMID:17974005
82 O14639 UniProtKB Alternative sequence 531 531 . . . ID=VSP_057209;Note=In isoform 6. H->HDA;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
83 O14639 UniProtKB Natural variant 434 434 . . . ID=VAR_050141;Note=P->T;Dbxref=dbSNP:rs11593544
84 O14639 UniProtKB Natural variant 637 637 . . . ID=VAR_050142;Note=R->G;Dbxref=dbSNP:rs7091419
85 O14639 UniProtKB Sequence conflict 499 499 . . . Note=R->L;Ontology_term=ECO:0000305;evidence=ECO:0000305
86 O14639 UniProtKB Sequence conflict 532 532 . . . Note=A->R;Ontology_term=ECO:0000305;evidence=ECO:0000305
87 O14639 UniProtKB Sequence conflict 563 563 . . . Note=K->E;Ontology_term=ECO:0000305;evidence=ECO:0000305
88 O14639 UniProtKB Sequence conflict 578 578 . . . Note=V->I;Ontology_term=ECO:0000305;evidence=ECO:0000305
89 ##sequence-region A0A077ZFY8 1 973
90 A0A077ZFY8 UniProtKB Domain 1 89 . . . Note=Mur_ligase;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF01225
91 A0A077ZFY8 UniProtKB Domain 96 279 . . . Note=Mur_ligase_M;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF08245
92 A0A077ZFY8 UniProtKB Domain 300 349 . . . Note=Mur_ligase_C;Ontology_term=ECO:0000259;evidence=ECO:0000259|Pfam:PF02875
93 A0A077ZFY8 UniProtKB Coiled coil 867 887 . . . Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Coils
94 A0A077ZFY8 UniProtKB Coiled coil 951 971 . . . Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:Coils
95 ##sequence-region Q13685 1 434
96 Q13685 UniProtKB Chain 1 434 . . . ID=PRO_0000050832;Note=Angio-associated migratory cell protein
97 Q13685 UniProtKB Repeat 89 129 . . . Note=WD 1
98 Q13685 UniProtKB Repeat 132 171 . . . Note=WD 2
99 Q13685 UniProtKB Repeat 173 212 . . . Note=WD 3
100 Q13685 UniProtKB Repeat 214 254 . . . Note=WD 4
101 Q13685 UniProtKB Repeat 258 299 . . . Note=WD 5
102 Q13685 UniProtKB Repeat 315 354 . . . Note=WD 6
103 Q13685 UniProtKB Repeat 356 395 . . . Note=WD 7
104 Q13685 UniProtKB Repeat 398 433 . . . Note=WD 8
105 Q13685 UniProtKB Compositional bias 53 59 . . . Note=Poly-Glu
106 Q13685 UniProtKB Modified residue 20 20 . . . Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24275569;Dbxref=PMID:24275569
107 Q13685 UniProtKB Natural variant 250 250 . . . ID=VAR_037061;Note=I->V;Dbxref=dbSNP:rs2305835