Mercurial > repos > bgruening > uniprot_rest_interface
diff test-data/test2_retrieve.gff @ 0:48522382b6a4 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit 2b8ad1bbfe098129ae32cd8311a755dff58ae97b-dirty
| author | bgruening |
|---|---|
| date | Fri, 09 Oct 2015 16:42:22 -0400 |
| parents | |
| children | cd2a41c65447 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test2_retrieve.gff Fri Oct 09 16:42:22 2015 -0400 @@ -0,0 +1,55 @@ +##gff-version 3 +##sequence-region S0DS17 1 369 +##sequence-region M5BAG7 1 563 +##sequence-region A0A077Z587 1 772 +##sequence-region A0A077ZFY8 1 973 +##sequence-region O14639 1 778 +O14639 UniProtKB Chain 1 778 . . . ID=PRO_0000075697;Note=Actin-binding LIM protein 1 +O14639 UniProtKB Domain 97 156 . . . Note=LIM zinc-binding 1;evidence=ECO:0000255|PROSITE-ProRule:PRU00125 +O14639 UniProtKB Domain 156 216 . . . Note=LIM zinc-binding 2;evidence=ECO:0000255|PROSITE-ProRule:PRU00125 +O14639 UniProtKB Domain 224 283 . . . Note=LIM zinc-binding 3;evidence=ECO:0000255|PROSITE-ProRule:PRU00125 +O14639 UniProtKB Domain 283 343 . . . Note=LIM zinc-binding 4;evidence=ECO:0000255|PROSITE-ProRule:PRU00125 +O14639 UniProtKB Domain 710 778 . . . Note=HP;evidence=ECO:0000255|PROSITE-ProRule:PRU00595 +O14639 UniProtKB Coiled coil 590 614 . . . evidence=ECO:0000255 +O14639 UniProtKB Modified residue 367 367 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:19690332 +O14639 UniProtKB Modified residue 373 373 . . . Note=Phosphotyrosine;evidence=ECO:0000244|PubMed:19690332 +O14639 UniProtKB Modified residue 396 396 . . . Note=Phosphotyrosine;evidence=ECO:0000244|PubMed:15592455 +O14639 UniProtKB Modified residue 426 426 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:24275569 +O14639 UniProtKB Modified residue 431 431 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:19690332 +O14639 UniProtKB Modified residue 433 433 . . . Note=Phosphothreonine;evidence=ECO:0000244|PubMed:19690332 +O14639 UniProtKB Modified residue 435 435 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:21406692,ECO:0000244|PubMed:24275569 +O14639 UniProtKB Modified residue 439 439 . . . Note=Phosphotyrosine;evidence=ECO:0000244|PubMed:15144186 +O14639 UniProtKB Modified residue 455 455 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:24275569 +O14639 UniProtKB Modified residue 458 458 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648 +O14639 UniProtKB Modified residue 587 587 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648 +O14639 UniProtKB Modified residue 640 640 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231 +O14639 UniProtKB Modified residue 655 655 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648 +O14639 UniProtKB Modified residue 706 706 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:24275569 +O14639 UniProtKB Alternative sequence 1 316 . . . ID=VSP_012099;Note=In isoform 3%2C isoform 4 and isoform 5.;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005 +O14639 UniProtKB Alternative sequence 1 81 . . . ID=VSP_012100;Note=In isoform 2 and isoform 6.;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:7584044 +O14639 UniProtKB Alternative sequence 347 347 . . . ID=VSP_041185;Note=In isoform 5 and isoform 6.;evidence=ECO:0000303|PubMed:14702039 +O14639 UniProtKB Alternative sequence 348 373 . . . ID=VSP_012101;Note=In isoform 4.;evidence=ECO:0000303|PubMed:15489334 +O14639 UniProtKB Alternative sequence 480 514 . . . ID=VSP_012102;Note=In isoform 3%2C isoform 4 and isoform 5.;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005 +O14639 UniProtKB Alternative sequence 531 531 . . . ID=VSP_057209;Note=In isoform 6.;evidence=ECO:0000303|PubMed:14702039 +O14639 UniProtKB Natural variant 434 434 . . . ID=VAR_050141;Dbxref=dbSNP:rs11593544 +O14639 UniProtKB Natural variant 637 637 . . . ID=VAR_050142;Dbxref=dbSNP:rs7091419 +O14639 UniProtKB Sequence conflict 499 499 . . . evidence=ECO:0000305 +O14639 UniProtKB Sequence conflict 532 532 . . . evidence=ECO:0000305 +O14639 UniProtKB Sequence conflict 563 563 . . . evidence=ECO:0000305 +O14639 UniProtKB Sequence conflict 578 578 . . . evidence=ECO:0000305 +##sequence-region M5B8V9 1 582 +##sequence-region A0A077ZHN8 1 634 +##sequence-region Q0P8A9 1 310 +##sequence-region Q13685 1 434 +Q13685 UniProtKB Chain 1 434 . . . ID=PRO_0000050832;Note=Angio-associated migratory cell protein +Q13685 UniProtKB Repeat 89 129 . . . Note=WD 1 +Q13685 UniProtKB Repeat 132 171 . . . Note=WD 2 +Q13685 UniProtKB Repeat 173 212 . . . Note=WD 3 +Q13685 UniProtKB Repeat 214 254 . . . Note=WD 4 +Q13685 UniProtKB Repeat 258 299 . . . Note=WD 5 +Q13685 UniProtKB Repeat 315 354 . . . Note=WD 6 +Q13685 UniProtKB Repeat 356 395 . . . Note=WD 7 +Q13685 UniProtKB Repeat 398 433 . . . Note=WD 8 +Q13685 UniProtKB Compositional bias 53 59 . . . Note=Poly-Glu +Q13685 UniProtKB Modified residue 20 20 . . . Note=Phosphoserine;evidence=ECO:0000244|PubMed:24275569 +Q13685 UniProtKB Natural variant 250 250 . . . ID=VAR_037061;Dbxref=dbSNP:rs2305835