Mercurial > repos > bgruening > uniprot_rest_interface
diff uniprot.xml @ 10:95fb5712344f draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit 1c020106d4d7f957c9f1ec0d9885bbb2d56e70e7
author | bgruening |
---|---|
date | Tue, 06 Aug 2024 14:49:45 +0000 |
parents | 468c71dac78a |
children |
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--- a/uniprot.xml Wed May 22 21:18:15 2024 +0000 +++ b/uniprot.xml Tue Aug 06 14:49:45 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="uniprot" name="UniProt" version="0.5" profile="23.1"> +<tool id="uniprot" name="UniProt" version="0.6" profile="23.1"> <description>ID mapping and retrieval</description> <requirements> <requirement type="package" version="2.25.1">requests</requirement> @@ -865,7 +865,12 @@ <param name="id_column" value="c1"/> <param name="format" value="gff"/> <param name="tool_choice" value="retrieve"/> - <output name="outfile_retrieve_gff" file="test2_retrieve.gff" ftype="gff" compare="sim_size" /> + <output name="outfile_retrieve_gff" ftype="gff"> + <assert_contents> + <has_n_lines min="80"/> + <has_text text="UniProtKB"/> + </assert_contents> + </output> </test> <test expect_num_outputs="1"> <param name="infile" value="id_uniprot.tab" ftype="tabular"/> @@ -873,7 +878,7 @@ <param name="tool_choice" value="map"/> <param name="from" value="UniProtKB_AC-ID"/> <param name="to" value="Gene_Name"/> - <output name="outfile_map" file="test1_map.tab" ftype="tabular"/> + <output name="outfile_map" file="test1_map.tab" ftype="tabular" sort="true"/> </test> <test expect_num_outputs="1"> <param name="infile" value="id_map_refseq.txt" ftype="tabular"/> @@ -881,7 +886,7 @@ <param name="tool_choice" value="map"/> <param name="from" value="RefSeq_Nucleotide"/> <param name="to" value="UniProtKB"/> - <output name="outfile_map" file="test2_map.tab" ftype="tabular"/> + <output name="outfile_map" file="test2_map.tab" ftype="tabular" sort="true"/> </test> </tests> <help><![CDATA[