Mercurial > repos > bgruening > uniprot_rest_interface

diff uniprot.xml @ 10:95fb5712344f draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit 1c020106d4d7f957c9f1ec0d9885bbb2d56e70e7
author bgruening
date Tue, 06 Aug 2024 14:49:45 +0000
parents 468c71dac78a
children
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--- a/uniprot.xml	Wed May 22 21:18:15 2024 +0000
+++ b/uniprot.xml	Tue Aug 06 14:49:45 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="uniprot" name="UniProt" version="0.5" profile="23.1">
+<tool id="uniprot" name="UniProt" version="0.6" profile="23.1">
     <description>ID mapping and retrieval</description>
     <requirements>
         <requirement type="package" version="2.25.1">requests</requirement>
@@ -865,7 +865,12 @@
             <param name="id_column" value="c1"/>
             <param name="format" value="gff"/>
             <param name="tool_choice" value="retrieve"/>
-            <output name="outfile_retrieve_gff" file="test2_retrieve.gff" ftype="gff" compare="sim_size" />
+            <output name="outfile_retrieve_gff" ftype="gff">
+                <assert_contents>
+                    <has_n_lines min="80"/>
+                    <has_text text="UniProtKB"/>
+                </assert_contents>
+            </output>
         </test>
         <test expect_num_outputs="1">
             <param name="infile" value="id_uniprot.tab" ftype="tabular"/>
@@ -873,7 +878,7 @@
             <param name="tool_choice" value="map"/>
             <param name="from" value="UniProtKB_AC-ID"/>
             <param name="to" value="Gene_Name"/>
-            <output name="outfile_map" file="test1_map.tab" ftype="tabular"/>
+            <output name="outfile_map" file="test1_map.tab" ftype="tabular" sort="true"/>
         </test>
         <test expect_num_outputs="1">
             <param name="infile" value="id_map_refseq.txt" ftype="tabular"/>
@@ -881,7 +886,7 @@
             <param name="tool_choice" value="map"/>
             <param name="from" value="RefSeq_Nucleotide"/>
             <param name="to" value="UniProtKB"/>
-            <output name="outfile_map" file="test2_map.tab" ftype="tabular"/>
+            <output name="outfile_map" file="test2_map.tab" ftype="tabular" sort="true"/>
         </test>
     </tests>
     <help><![CDATA[