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comparison wordcloud.xml @ 4:6055ffae8903 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/wordcloud commit 91a79a90a63fc6f14b8a99aaa224d1dfd74c9f68
author bgruening
date Wed, 29 Oct 2025 10:25:47 +0000
parents 7b583659453b
children
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3:7b583659453b 4:6055ffae8903
1 <tool id="wordcloud" name="Generate a word cloud" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" license="MIT"> 1 <tool id="wordcloud" name="Generate a word cloud" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" license="MIT">
2 <description>with highly customizable appearance</description> 2 <description>with highly customizable appearance</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">1.9.4</token> 4 <token name="@TOOL_VERSION@">1.9.4</token>
5 <token name="@VERSION_SUFFIX@">3</token> 5 <token name="@VERSION_SUFFIX@">4</token>
6 <token name="@PROFILE@">23.0</token> 6 <token name="@PROFILE@">23.0</token>
7 </macros> 7 </macros>
8 <requirements> 8 <requirements>
9 <requirement type="package" version="@TOOL_VERSION@">wordcloud</requirement> 9 <requirement type="package" version="@TOOL_VERSION@">wordcloud</requirement>
10 </requirements> 10 </requirements>
63 #end if 63 #end if
64 #if $color_choice.color_option == "color": 64 #if $color_choice.color_option == "color":
65 --color '$color_choice.color' 65 --color '$color_choice.color'
66 #else if $color_choice.color_option == "colormask": 66 #else if $color_choice.color_option == "colormask":
67 --colormask $color_choice.colormask 67 --colormask $color_choice.colormask
68 #end if 68 #else if $color_choice.colormap == "colormap":
69 #if $colormap 69 --colormap $color_choice.colormap
70 --colormap $colormap
71 #end if 70 #end if
72 #if str($prefer_horizontal): 71 #if str($prefer_horizontal):
73 --prefer_horizontal $prefer_horizontal 72 --prefer_horizontal $prefer_horizontal
74 #end if 73 #end if
75 #if str($scale): 74 #if str($scale):
158 </conditional> 157 </conditional>
159 <conditional name="color_choice" label="Choose color option"> 158 <conditional name="color_choice" label="Choose color option">
160 <param name="color_option" type="select" label="Color option"> 159 <param name="color_option" type="select" label="Color option">
161 <option value="color">Color</option> 160 <option value="color">Color</option>
162 <option value="colormask">Color Mask</option> 161 <option value="colormask">Color Mask</option>
162 <option value="colormap">Colormap</option>
163 </param> 163 </param>
164 <when value="color"> 164 <when value="color">
165 <param argument="--color" type="color" value="#00ff00" optional="true" label="Use given color as coloring for the image"> 165 <param argument="--color" type="color" value="#00ff00" optional="true" label="Use given color as coloring for the image">
166 <validator type="regex" message="Please select a valid RGB color">[#][0-9A-Fa-f]{6}</validator> 166 <validator type="regex" message="Please select a valid RGB color">[#][0-9A-Fa-f]{6}</validator>
167 </param> 167 </param>
168 </when> 168 </when>
169 <when value="colormask"> 169 <when value="colormask">
170 <param argument="--colormask" type="data" format="png" optional="true" label="Color Mask" help="Upload a color mask image"/> 170 <param argument="--colormask" type="data" format="png" optional="true" label="Color Mask" help="Upload a color mask image"/>
171 </when> 171 </when>
172 <when value="colormap">
173 <param argument="--colormap" type="select" value="viridis" optional="true" label="Matplotlib colormap name">
174 <option value="viridis">viridis</option>
175 <option value="plasma">plasma</option>
176 <option value="inferno">inferno</option>
177 <option value="magma">magma</option>
178 <option value="cividis">cividis</option>
179 <option value="Greys">Greys</option>
180 <option value="Purples">Purples</option>
181 <option value="Blues">Blues</option>
182 <option value="Greens">Greens</option>
183 <option value="Oranges">Oranges</option>
184 <option value="Reds">Reds</option>
185 <option value="YlOrBr">YlOrBr</option>
186 <option value="YlOrRd">YlOrRd</option>
187 <option value="OrRd">OrRd</option>
188 <option value="PuRd">PuRd</option>
189 <option value="RdPu">RdPu</option>
190 <option value="BuPu">BuPu</option>
191 <option value="GnBu">GnBu</option>
192 <option value="PuBu">PuBu</option>
193 <option value="YlGnBu">YlGnBu</option>
194 <option value="PuBuGn">PuBuGn</option>
195 <option value="BuGn">BuGn</option>
196 <option value="YlGn">YlGn</option>
197 </param>
198 </when>
172 </conditional> 199 </conditional>
173 <param argument="--colormap" type="select" value="viridis" optional="true" label="Matplotlib colormap name">
174 <option value="viridis">viridis</option>
175 <option value="plasma">plasma</option>
176 <option value="inferno">inferno</option>
177 <option value="magma">magma</option>
178 <option value="cividis">cividis</option>
179 <option value="Greys">Greys</option>
180 <option value="Purples">Purples</option>
181 <option value="Blues">Blues</option>
182 <option value="Greens">Greens</option>
183 <option value="Oranges">Oranges</option>
184 <option value="Reds">Reds</option>
185 <option value="YlOrBr">YlOrBr</option>
186 <option value="YlOrRd">YlOrRd</option>
187 <option value="OrRd">OrRd</option>
188 <option value="PuRd">PuRd</option>
189 <option value="RdPu">RdPu</option>
190 <option value="BuPu">BuPu</option>
191 <option value="GnBu">GnBu</option>
192 <option value="PuBu">PuBu</option>
193 <option value="YlGnBu">YlGnBu</option>
194 <option value="PuBuGn">PuBuGn</option>
195 <option value="BuGn">BuGn</option>
196 <option value="YlGn">YlGn</option>
197 </param>
198 <param argument="--prefer_horizontal" type="float" min="0" max="1" value="0.9" optional="true" label="Ratio of times to try horizontal fitting as opposed to vertical"/> 200 <param argument="--prefer_horizontal" type="float" min="0" max="1" value="0.9" optional="true" label="Ratio of times to try horizontal fitting as opposed to vertical"/>
199 <param argument="--scale" type="float" value="1.0" optional="True" label="Scaling between computation and drawing"/> 201 <param argument="--scale" type="float" value="1.0" optional="True" label="Scaling between computation and drawing"/>
200 <param argument="--relative_scaling" type="float" min="0.0" max="1.0" value="0.0" optional="true" label="Scaling of words by frequency (0 - 1)"/> 202 <param argument="--relative_scaling" type="float" min="0.0" max="1.0" value="0.0" optional="true" label="Scaling of words by frequency (0 - 1)"/>
201 <param argument="--no_collocations" type="boolean" truevalue="--no_collocations" falsevalue="" value="True" label="Do not add collocations (bigrams) to word cloud"/> 203 <param argument="--no_collocations" type="boolean" truevalue="--no_collocations" falsevalue="" value="True" label="Do not add collocations (bigrams) to word cloud"/>
202 <param argument="--include_numbers" type="boolean" truevalue="--include_numbers" falsevalue="" value="False" label="Whether to include numbers as phrases or not"/> 204 <param argument="--include_numbers" type="boolean" truevalue="--include_numbers" falsevalue="" value="False" label="Whether to include numbers as phrases or not"/>
212 <param name="text" value="test.txt"/> 214 <param name="text" value="test.txt"/>
213 <param name="font_step" value="2"/> 215 <param name="font_step" value="2"/>
214 <param name="min_word_length" value="2"/> 216 <param name="min_word_length" value="2"/>
215 <param name="width" value="200"/> 217 <param name="width" value="200"/>
216 <param name="height" value="100"/> 218 <param name="height" value="100"/>
217 <param name="colormap" value="inferno"/> 219 <conditional name="color_choice">
220 <param name="color_option" value="colormap"/>
221 <param name="colormap" value="inferno"/>
222 </conditional>
218 <param name="scale" value="1.8"/> 223 <param name="scale" value="1.8"/>
219 <param name="no_collocations" value="false"/> 224 <param name="no_collocations" value="false"/>
220 <conditional name="fonts"> 225 <conditional name="fonts">
221 <param name="fonts_selector" value="none"/> 226 <param name="fonts_selector" value="none"/>
222 </conditional> 227 </conditional>