Mercurial > repos > bgruening > woundhealing_scratch_assay

comparison measureWoundClosing.groovy @ 1:6b341a048c2e draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 6303638b71a30e15a36550af938ee35e49be560b
author bgruening
date Tue, 22 Apr 2025 15:50:15 +0000
parents 8948cc562b7c
children
comparison
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0:8948cc562b7c 1:6b341a048c2e
179 outputDir.mkdir() 179 outputDir.mkdir()
180 // save table 180 // save table
181 rt.save(new File(outputDir, datasetId + ".csv").toString()); 181 rt.save(new File(outputDir, datasetId + ".csv").toString());
182 // save binned image with ROI 182 // save binned image with ROI
183 binnedImp.setRoi(scratchROI, false) 183 binnedImp.setRoi(scratchROI, false)
184 IJ.save(binnedImp, new File(outputDir, datasetId + ".tif").toString()); 184 IJ.save(binnedImp, new File(outputDir, datasetId + ".tiff").toString());
185 } 185 }
186 186
187 println("Analysis of "+datasetId+" is done!") 187 println("Analysis of "+datasetId+" is done!")
188 if ( headless ) System.exit(0) 188 if ( headless ) System.exit(0)
189 189