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comparison lncadeep.xml @ 2:b52bf1d87b7a draft

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author biancakrieger
date Wed, 21 Apr 2021 09:56:57 +0000
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1:48f8c2277135 2:b52bf1d87b7a
1 <tool id="lncadeep" name="LncADeep" >
2 <description>"LncADeep"</description>
3 <requirements>
4 <container type="docker">bianca7/lncadeep</container>
5 </requirements>
6 <command><![CDATA[python /usr/local/lib/python2.7/site-packages/LncADeep/LncADeep.py -MODE anno
7 -o test
8 -l $RNA_FILE
9 -p $PROTEIN_FILE
10 -a 1
11 && tar -cvf results.tar test_LncADeep_anno_results && mv results.tar $results
12 ]]></command>
13 <inputs>
14 <param type="data" name="RNA_FILE" format="fasta" label="RNA sequences in FASTA format" />
15 <param type="data" name="PROTEIN_FILE" format="fasta" label="protein sequences in FASTA format" />
16 </inputs>
17 <outputs>
18 <data name="results" format="tar" />
19 </outputs>
20 </tool>