Mercurial > repos > biancakrieger > nc_rna_enios

diff ezlncpred.xml @ 5:d72d2ed9efac draft default tip

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author biancakrieger
date Wed, 21 Apr 2021 10:35:29 +0000
parents 1831c7f4c173
children
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--- a/ezlncpred.xml	Wed Apr 21 10:09:28 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
-<tool id="ezlncpred" name="ezLncPred" >
-    <description>"ezLncPred"</description>
-    <requirements>
-        <container type="docker">eniosorg/bim:ezlncpred</container>
-    </requirements>
-    <command><![CDATA[ezLncPred -i $fasta_file -o out $model
-      #if $model =="CPAT"
-        -p Human
-      #end if
-      #if $model =="CPPred"
-        -p Human
-      #end if
-      #if $model =="longdist"
-        -z 200 -p Human
-      #end if
-      && mv out $out
-   ]]></command>
-   <inputs>
-     <param type="data" name="fasta_file" format="fasta" />
-     <param type="select" name="model">
-       <!--option value="CNCI">CNCI</option>
-       <option value="CPC2">CPC2</option-->
-       <option value="CPAT">CPAT</option>
-       <option value="lgc">lgc</option>
-       <option value="CPPred">CPPred</option>
-       <!--option value="GFStack">GFStack</option-->
-       <option value="longdist">longdist</option>
-       <!--option value="PLEK">PLEK</option>
-       <option value="LncADeep">LncDeep</option-->
-     </param>
-  </inputs>
-  <outputs>
-    <data name="out" format="txt" from_work_directory="out"/>
-  </outputs>
-</tool>