Mercurial > repos > biancakrieger > nc_rna_enios

diff lncadeep.xml @ 5:d72d2ed9efac draft default tip

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author biancakrieger
date Wed, 21 Apr 2021 10:35:29 +0000
parents 1831c7f4c173
children
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--- a/lncadeep.xml	Wed Apr 21 10:09:28 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,20 +0,0 @@
-<tool id="lncadeep" name="LncADeep" >
-    <description>"LncADeep"</description>
-    <requirements>
-        <container type="docker">bianca7/lncadeep</container>
-    </requirements>
-    <command><![CDATA[python /usr/local/lib/python2.7/site-packages/LncADeep/LncADeep.py -MODE anno
-      -o test
-      -l $RNA_FILE
-      -p $PROTEIN_FILE
-      -a 1
-      && tar -cvf results.tar test_LncADeep_anno_results && mv results.tar $results
-    ]]></command>
-    <inputs>
-        <param type="data" name="RNA_FILE" format="fasta" label="RNA  sequences in FASTA format" />
-        <param type="data" name="PROTEIN_FILE" format="fasta" label="protein sequences in FASTA format" />
-    </inputs>
-    <outputs>
-        <data name="results" format="tar" />
-    </outputs>
-</tool>