Mercurial > repos > big-tiandm > degseq

comparison tool_dependencies.xml @ 15:1f49db503877 draft

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Uploaded
author big-tiandm
date Sat, 15 Nov 2014 00:25:53 -0500
parents e10ada1be34d
children d5fe2e8bd819
comparison
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14:e10ada1be34d 15:1f49db503877
16 <package name="R" version="3.0.1" /> 16 <package name="R" version="3.0.1" />
17 </repository> 17 </repository>
18 </action> 18 </action>
19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> 19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
20 20
21 <action type="shell_command">RPATH=`which R` </action> 21
22 22
23 <action type="set_environment"> 23 <action type="set_environment">
24 <environment_variable name="PATH" action="prepend_to">$RPATH</environment_variable> 24 <environment_variable name="PATH" action="prepend_to">
25 <action type="shell_command">which R</action>
26 </environment_variable>
25 </action> 27 </action>
26 28
27 </actions> 29 </actions>
28 </install> 30 </install>
29 31